←Back to structures

IMGVR_UViG_3300025605_000425-3300025605-Ga0209720_10069181

Arc-Vir

IMGVR_UViG_3300025605_000425-3300025605-Ga0209720_10069181

Identity

Kingdom:
archaea

Quality

60.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-107
PDB
Domain cluster: rep: IMGVR_UViG_3300001784_000289-3300001784-JGI20225J20221_10000041414__D5-96
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.68 63.0 5.98e-01 100.0% 92.0%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 43.0 4.04e-01 73.2% 91.8%
2bn4B03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 44.0 3.77e-01 85.6% 46.8%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 41.0 4.02e-01 84.5% 63.8%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 40.0 4.10e-01 82.5% 71.0%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 52.0 4.91e-01 95.9% 82.4%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 4.09e-01 82.5% 74.4%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 3.81e-01 96.9% 60.0%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 4.11e-01 83.5% 68.8%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 39.0 3.64e-01 71.1% 92.1%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 4.08e-01 81.4% 76.1%
3e38A02 2.60.40.3090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 36.0 3.98e-01 85.6% 82.3%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 41.0 3.79e-01 79.4% 73.8%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 36.0 3.05e-01 97.9% 40.4%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 40.0 3.63e-01 78.4% 84.1%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.55 42.0 3.96e-01 96.9% 66.4%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 38.0 3.86e-01 74.2% 92.9%
7xlqD01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 39.0 3.60e-01 76.3% 87.6%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.54 41.0 4.06e-01 82.5% 84.8%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.54 38.0 3.75e-01 96.9% 66.1%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 37.0 3.60e-01 71.1% 100.0%
3mxqC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 37.0 3.48e-01 73.2% 90.4%
4aqzA00 2.60.40.3470 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 3.72e-01 83.5% 75.4%
2vlgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 41.0 4.05e-01 82.5% 91.2%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.77e-01 79.4% 80.7%
1ie0A00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.53 39.0 3.38e-01 79.4% 51.3%
2wiqA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.52 42.0 3.25e-01 87.6% 92.9%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 39.0 3.82e-01 79.4% 85.0%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 38.0 3.71e-01 78.4% 77.5%
4da5A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 3.88e-01 76.3% 86.7%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.73e-01 82.5% 80.0%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 4.04e-01 96.9% 84.4%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 36.0 3.68e-01 74.2% 100.0%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.65e-01 84.5% 65.3%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 39.0 3.25e-01 83.5% 58.5%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 39.0 3.89e-01 82.5% 92.0%
1ej8A00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.51 44.0 3.90e-01 95.9% 70.7%
2q1zB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 39.0 3.97e-01 81.4% 91.4%
5tz6B02 3.10.129.120 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.50 44.0 3.85e-01 99.0% 70.1%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 44.0 3.46e-01 100.0% 93.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4954563 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.92 77.0 8.26e-01 94.8% 98.8%
3588729 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.81 71.0 7.24e-01 92.8% 100.0%
3966429 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.72 60.0 6.22e-01 92.8% 95.6%
3603127 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 60.0 6.24e-01 93.8% 96.7%
4393593 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.71 62.0 6.26e-01 96.9% 94.7%
3970827 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 57.0 6.00e-01 92.8% 97.6%
4810019 1.1.13.57 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.70 61.0 5.85e-01 93.8% 88.2%
3267872 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 57.0 5.18e-01 89.7% 73.8%
4257535 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 51.0 4.83e-01 96.9% 67.0%
4260084 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 52.0 4.85e-01 97.9% 65.8%
3671608 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 45.0 4.34e-01 83.5% 60.0%
3969448 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 57.0 5.60e-01 93.8% 100.0%
3592576 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.66 44.0 4.06e-01 81.4% 53.6%
3719440 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.64 45.0 4.10e-01 82.5% 56.0%
3503973 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 38.0 3.50e-01 96.9% 44.6%
3955284 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 53.0 4.74e-01 95.9% 65.7%
3626966 1.1.7.90 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.62 49.0 4.76e-01 86.6% 75.5%
3216034 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 4.06e-01 84.5% 56.7%
3391207 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 46.0 4.84e-01 84.5% 91.0%
3620731 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.59 42.0 3.70e-01 74.2% 83.6%
4012832 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.59 48.0 5.01e-01 100.0% 94.4%
3401870 11.1.1.214 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N 0.56 44.0 4.12e-01 84.5% 70.0%
3608810 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 4.30e-01 79.4% 84.4%
4020238 1.1.7.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.55 47.0 4.14e-01 94.8% 64.0%
5046055 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.55 39.0 3.70e-01 75.3% 92.5%
5005720 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 39.0 3.63e-01 75.3% 82.4%
3915837 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.55 37.0 3.35e-01 70.1% 71.1%
4943531 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 40.0 3.73e-01 77.3% 95.8%
5040729 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 38.0 3.73e-01 82.5% 66.4%
4980080 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 42.0 3.75e-01 83.5% 72.9%
3041218 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 39.0 3.34e-01 78.4% 69.3%
5083223 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 39.0 3.60e-01 78.4% 84.6%
3587340 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 37.0 3.97e-01 97.9% 83.5%
4951489 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 41.0 3.88e-01 82.5% 83.5%
4980703 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 41.0 3.67e-01 83.5% 70.0%
4980670 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 41.0 3.94e-01 82.5% 87.3%
3634800 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.72e-01 76.3% 88.6%
5044941 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 38.0 3.73e-01 76.3% 100.0%
4930505 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 39.0 3.79e-01 79.4% 87.3%
5008034 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 39.0 3.65e-01 80.4% 74.4%
5053323 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 37.0 3.53e-01 74.2% 90.4%
3968143 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.61e-01 77.3% 94.2%
3678082 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 40.0 2.28e-01 80.4% 14.8%
4957168 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 40.0 3.85e-01 83.5% 85.2%
5059340 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 38.0 3.50e-01 77.3% 94.6%
4962732 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 40.0 3.75e-01 82.5% 79.2%
5047292 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 38.0 3.72e-01 78.4% 98.2%
4959378 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 40.0 3.93e-01 82.5% 90.5%
5018633 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 40.0 3.54e-01 82.5% 68.6%
4945264 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 40.0 3.84e-01 82.5% 87.3%
5049836 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 40.0 3.51e-01 83.5% 66.2%
4980076 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 41.0 3.62e-01 86.6% 71.7%
5021460 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 39.0 3.64e-01 82.5% 76.8%
3965931 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 39.0 3.79e-01 82.5% 89.1%
5044350 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 37.0 3.35e-01 76.3% 84.4%
4939835 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.50 39.0 3.70e-01 82.5% 87.0%
3963339 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.50 37.0 3.53e-01 79.4% 92.5%
D2 medium residues 111-206
PDB