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IMGVR_UViG_3300025630_003131-3300025630-Ga0208004_100049519

Arc-Vir

IMGVR_UViG_3300025630_003131-3300025630-Ga0208004_100049519

Quality

86.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-110
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06067.17 best DUF932 91.8 7.70e-26 100.0% 46.7%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 43.0 3.74e-01 71.3% 45.3%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.63 49.0 4.22e-01 99.1% 52.4%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.61 43.0 4.05e-01 73.1% 72.9%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.61 46.0 3.38e-01 79.6% 36.6%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 42.0 3.89e-01 71.3% 86.3%
1lshB00 2.20.90.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain 0.60 43.0 3.67e-01 91.7% 46.0%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 3.79e-01 70.4% 85.1%
4meeA00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.60 45.0 3.26e-01 79.6% 38.0%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.58 34.0 3.33e-01 88.9% 50.8%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 50.0 3.55e-01 94.4% 60.3%
1eq6A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.58 52.0 4.34e-01 100.0% 59.8%
5eo6B00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.58 46.0 3.40e-01 87.0% 68.1%
1of5B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.88e-01 73.1% 92.2%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.97e-01 75.9% 90.6%
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 37.0 3.51e-01 79.6% 55.9%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.73e-01 75.9% 91.8%
4bnqB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.54 43.0 3.61e-01 86.1% 96.4%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.71e-01 78.7% 90.6%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 45.0 3.36e-01 94.4% 51.8%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.71e-01 78.7% 86.2%
1tk1A00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.52 47.0 3.72e-01 100.0% 81.3%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 35.0 3.94e-01 70.4% 100.0%
2carB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.52 41.0 3.45e-01 86.1% 93.3%
2r39A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.67e-01 94.4% 72.5%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 36.0 3.56e-01 75.9% 87.0%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.73e-01 82.4% 88.2%
5fokA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.50 45.0 2.87e-01 100.0% 19.9%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3941745 241.15.1.4 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › DUF932 0.70 55.0 5.02e-01 86.1% 62.8%
3228525 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.67 49.0 4.96e-01 90.7% 76.4%
3285746 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.63 45.0 3.96e-01 73.1% 78.1%
3470047 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.62 37.0 4.10e-01 75.0% 74.1%
3981236 5084.5.4.6 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › TraF_2 0.61 41.0 3.00e-01 75.9% 25.9%
3749143 243.3.1.20 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.60 46.0 4.42e-01 100.0% 70.4%
3593270 897.1.1.0 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.60 48.0 3.83e-01 87.0% 52.3%
4629131 9.29.1.1 beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK 0.59 38.0 3.70e-01 77.8% 56.9%
5000341 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.59 41.0 3.96e-01 71.3% 100.0%
3169840 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.59 47.0 3.83e-01 85.2% 54.5%
3843944 243.5.1.7 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AKAP28 0.59 43.0 4.15e-01 97.2% 67.2%
4018864 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.58 43.0 2.67e-01 78.7% 13.2%
3330850 243.3.1.12 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.58 42.0 4.43e-01 76.9% 90.0%
3262200 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 46.0 4.09e-01 85.2% 83.3%
3381230 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.57 40.0 3.95e-01 78.7% 67.8%
4040739 867.1.1.1 a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coprogen_oxidas 0.57 46.0 3.44e-01 88.9% 76.5%
3471294 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.57 41.0 3.92e-01 75.9% 90.7%
167906 4321.1.1.2 a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › DUF3298,PdaC 0.56 48.0 3.95e-01 97.2% 94.3%
4024130 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 40.0 3.49e-01 75.0% 88.5%
3972797 4321.1.1.1 a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › DUF3298 0.56 49.0 3.90e-01 98.1% 93.7%
3278526 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 42.0 3.94e-01 80.6% 88.9%
3995515 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 48.0 3.52e-01 97.2% 40.6%
3714344 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 3.09e-01 95.4% 25.8%
3929694 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 3.16e-01 99.1% 33.8%
3791149 5.1.3.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.55 47.0 3.23e-01 93.5% 33.1%
3359195 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 47.0 3.36e-01 96.3% 41.2%
3277627 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 41.0 4.05e-01 80.6% 87.8%
3961916 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.54 42.0 4.15e-01 83.3% 95.7%
3647885 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.53 43.0 3.13e-01 89.8% 39.7%
3481193 867.1.1.0 a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase 0.52 46.0 3.35e-01 100.0% 67.1%
3458192 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.52 43.0 3.17e-01 92.6% 41.0%
3459442 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.51 43.0 4.05e-01 93.5% 94.1%
3164281 5069.1.1.92 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › CcmF_C 0.51 34.0 3.48e-01 99.1% 72.0%
3419997 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.50 42.0 4.24e-01 96.3% 89.0%
4278326 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.50 40.0 3.74e-01 86.1% 86.7%
3216377 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 43.0 2.86e-01 97.2% 83.4%
D2 high residues 116-222
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06067.17 best DUF932 40.9 3.00e-10 86.9% 34.8%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 51.0 5.73e-01 91.6% 100.0%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.64 44.0 4.05e-01 70.1% 87.8%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 43.0 4.55e-01 86.9% 82.3%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 35.0 4.27e-01 81.3% 96.8%
2b2hA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.60 51.0 3.48e-01 92.5% 87.2%
2k3qA00 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.59 52.0 5.08e-01 100.0% 93.2%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.57 28.0 3.57e-01 80.4% 85.5%
4hzuS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.55 48.0 4.21e-01 97.2% 95.1%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.54 36.0 3.92e-01 88.8% 82.0%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 30.0 3.36e-01 92.5% 67.9%
2xppA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.53 28.0 2.58e-01 88.8% 36.5%
1ie0A00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.51 42.0 3.79e-01 91.6% 80.1%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.51 44.0 4.00e-01 96.3% 70.3%
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 46.0 3.69e-01 100.0% 84.5%
2f4mA01 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.51 40.0 3.22e-01 86.0% 86.1%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.51 34.0 3.75e-01 87.9% 84.7%
1w2qA01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.51 34.0 3.36e-01 95.3% 63.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3423711 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.69 47.0 4.65e-01 86.0% 66.4%
4030134 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.69 45.0 4.17e-01 88.8% 51.9%
4945647 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.66 46.0 4.81e-01 88.8% 77.0%
4948421 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.66 44.0 4.30e-01 85.0% 62.6%
3528056 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.64 44.0 4.08e-01 86.9% 55.0%
3916852 102.1.3.8 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Mab-21_C 0.60 51.0 5.08e-01 91.6% 91.8%
3600676 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 43.0 4.32e-01 87.9% 72.7%
3701680 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.57 44.0 4.63e-01 87.9% 88.9%
4427147 141.1.1.3 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.56 50.0 3.76e-01 100.0% 92.4%
3701878 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.55 41.0 3.54e-01 79.4% 64.0%
4929008 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.55 39.0 3.61e-01 75.7% 56.4%
3729348 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.54 44.0 3.73e-01 86.0% 62.9%
3798156 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.54 48.0 3.95e-01 100.0% 85.0%
3990437 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.54 42.0 3.61e-01 83.2% 52.0%
3216493 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.54 47.0 3.78e-01 100.0% 73.9%
3187233 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.54 44.0 2.87e-01 87.9% 25.0%
3213223 101.1.10.2 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C_2 0.54 44.0 3.22e-01 90.7% 82.5%
4029967 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.53 45.0 4.44e-01 93.5% 86.1%
5068471 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.52 40.0 3.58e-01 81.3% 78.7%
3784916 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.52 45.0 3.60e-01 100.0% 89.8%
3788683 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.51 44.0 3.51e-01 100.0% 86.3%
3253586 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.50 44.0 4.00e-01 98.1% 98.6%