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IMGVR_UViG_3300025632_000018-3300025632-Ga0209194_10001818

Arc-Vir

IMGVR_UViG_3300025632_000018-3300025632-Ga0209194_10001818

Quality

83.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-97
PDB
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xdpA02 3.30.1840.10 Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain 0.67 57.0 4.20e-01 98.6% 50.0%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.65 48.0 4.06e-01 78.9% 53.3%
1xreA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.65 42.0 3.69e-01 77.5% 42.0%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 50.0 4.10e-01 83.1% 96.9%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 38.0 2.94e-01 70.4% 25.5%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 49.0 3.70e-01 90.1% 85.5%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 37.0 2.74e-01 93.0% 22.8%
3hh7A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.60 47.0 4.86e-01 84.5% 92.3%
3im8A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.59 39.0 3.91e-01 100.0% 65.8%
5yjlB01 3.30.460.30 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain 0.59 46.0 3.53e-01 100.0% 37.3%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.58 45.0 4.02e-01 85.9% 77.4%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.79e-01 87.3% 87.0%
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.58 45.0 4.18e-01 88.7% 90.5%
3lurA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.58 48.0 3.73e-01 93.0% 80.4%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.56 41.0 3.58e-01 78.9% 50.4%
3mcsA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.00e-01 78.9% 90.3%
2y1rK00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 47.0 4.39e-01 95.8% 90.2%
5tkwA01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 47.0 3.68e-01 98.6% 90.0%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.61e-01 83.1% 90.2%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 48.0 4.14e-01 100.0% 60.7%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 40.0 3.80e-01 100.0% 62.2%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.48e-01 88.7% 80.3%
3i3vB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 46.0 3.61e-01 98.6% 85.8%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.64e-01 100.0% 58.3%
2esnA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 43.0 3.80e-01 91.5% 92.8%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.74e-01 91.5% 96.8%
2cpxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 40.0 3.90e-01 100.0% 72.2%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.68e-01 100.0% 69.3%
3cueC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 41.0 3.32e-01 84.5% 66.4%
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.53 38.0 3.90e-01 97.2% 79.1%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.63e-01 88.7% 86.3%
2od4B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.68e-01 100.0% 64.0%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 36.0 3.44e-01 100.0% 58.8%
4p6qA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 39.0 3.87e-01 100.0% 75.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.85e-01 88.7% 72.7%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.52 42.0 2.93e-01 100.0% 25.8%
1h0hB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 3.46e-01 94.4% 92.0%
2rftA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.52 37.0 2.63e-01 74.6% 95.0%
4rpoA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 41.0 3.60e-01 91.5% 87.3%
1q2lA03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 40.0 2.96e-01 91.5% 84.3%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.48e-01 87.3% 97.2%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.36e-01 88.7% 86.7%
1t9zA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 44.0 3.27e-01 97.2% 38.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.74 46.0 5.37e-01 88.7% 90.0%
3390562 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.71 56.0 5.66e-01 84.5% 85.7%
4950083 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 56.0 4.97e-01 88.7% 84.5%
3947539 4114.1.1.1 a+b two layers › PHP14-like › PHP14-like › PHP14-like › PP_kinase 0.69 58.0 4.16e-01 94.4% 47.1%
3476033 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.68 46.0 4.84e-01 83.1% 76.9%
4265078 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.67 50.0 4.98e-01 78.9% 97.3%
4032005 1118.1.1.1 a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_1 0.64 54.0 4.62e-01 100.0% 64.8%
3502011 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.63 52.0 4.95e-01 91.5% 78.8%
3480696 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 51.0 4.84e-01 87.3% 81.2%
3407739 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 48.0 4.28e-01 84.5% 91.4%
3734667 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 47.0 3.46e-01 78.9% 69.4%
3838009 1118.1.1.2 a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_2 0.62 53.0 4.85e-01 97.2% 81.1%
4990392 1118.1.1.1 a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_1 0.62 53.0 3.90e-01 100.0% 38.3%
4217868 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 53.0 4.21e-01 98.6% 95.5%
3247165 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.62 52.0 4.83e-01 93.0% 77.8%
3924444 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 46.0 2.98e-01 84.5% 31.8%
3958897 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.61 43.0 3.69e-01 76.1% 56.7%
5018277 5103.1.1.0 a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 0.59 45.0 4.10e-01 84.5% 84.0%
3927031 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 45.0 4.01e-01 84.5% 81.9%
3173787 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.79e-01 83.1% 86.7%
3635615 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 3.49e-01 88.7% 69.7%
4667955 304.150.1.0 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain 0.58 48.0 4.43e-01 95.8% 92.6%
3329735 327.11.2.37 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DEAH11_1st 0.58 36.0 3.71e-01 93.0% 64.3%
2721342 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.57 42.0 2.86e-01 100.0% 20.8%
3256537 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.57 46.0 3.27e-01 91.5% 57.1%
4032691 304.150.1.1 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.57 45.0 4.19e-01 90.1% 89.5%
3925716 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 43.0 2.99e-01 84.5% 46.0%
3588331 304.150.1.1 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.56 47.0 4.31e-01 94.4% 91.6%
4540762 304.150.1.1 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.56 46.0 4.16e-01 94.4% 85.6%
4985048 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.56 41.0 3.98e-01 78.9% 95.0%
4245789 304.150.1.1 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.56 44.0 4.14e-01 88.7% 91.1%
4621902 304.150.1.1 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.56 47.0 4.24e-01 95.8% 88.0%
4600921 304.41.1.0 a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain 0.56 42.0 3.34e-01 100.0% 38.1%
5016697 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.56 34.0 3.45e-01 93.0% 60.0%
4038624 304.150.1.1 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.55 45.0 4.16e-01 95.8% 92.9%
3558744 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 43.0 3.65e-01 88.7% 82.4%
3719117 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.54 47.0 2.85e-01 100.0% 24.4%
3796100 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 43.0 3.44e-01 88.7% 72.7%
415106 304.150.1.1 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.54 46.0 4.21e-01 98.6% 87.4%
4938565 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.54 38.0 3.63e-01 98.6% 61.1%
4533094 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 42.0 3.54e-01 88.7% 79.2%
3743110 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.53 44.0 3.92e-01 93.0% 99.0%
3923862 2484.1.1.15 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.53 43.0 2.99e-01 91.5% 88.6%
4947181 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.53 35.0 3.60e-01 98.6% 71.4%
3411359 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.44e-01 85.9% 98.4%
3724091 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.52 37.0 2.57e-01 74.6% 47.8%
4981191 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.52 36.0 3.64e-01 100.0% 74.3%
3796346 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 41.0 3.34e-01 90.1% 93.1%
3995314 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 40.0 3.38e-01 90.1% 94.1%
5028345 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.51 39.0 2.86e-01 83.1% 76.9%
2319482 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.51 42.0 2.95e-01 94.4% 57.4%
4958551 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.50 37.0 3.75e-01 98.6% 80.0%
3473574 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.50 42.0 3.84e-01 88.7% 71.1%
3390391 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.50 40.0 3.18e-01 88.7% 93.5%
3690788 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.50 36.0 2.44e-01 74.6% 54.4%
3927755 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.50 44.0 3.10e-01 95.8% 32.6%