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IMGVR_UViG_3300025632_000018-3300025632-Ga0209194_100018193
Arc-VirIMGVR_UViG_3300025632_000018-3300025632-Ga0209194_100018193
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 211-299
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xzmP00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 44.0 | 3.77e-01 | 93.3% | 41.9% |
| 2d1cA02 | 3.30.70.1570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 45.0 | 4.19e-01 | 92.1% | 60.4% |
| 2lxrA00 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.62 | 36.0 | 3.88e-01 | 89.9% | 67.1% |
| 1rgxA02 | 2.60.40.4230 | Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain | 0.60 | 41.0 | 4.71e-01 | 95.5% | 100.0% |
| 7q6gA01 | 3.30.1490.110 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.59 | 47.0 | 5.06e-01 | 88.8% | 100.0% |
| 4a2aA02 | 3.30.1490.110 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.59 | 50.0 | 5.10e-01 | 97.8% | 97.7% |
| 1opoC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 47.0 | 3.94e-01 | 91.0% | 98.2% |
| 4gl6A01 | 3.10.450.570 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain | 0.58 | 31.0 | 3.25e-01 | 70.8% | 54.9% |
| 4ofqA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 47.0 | 3.95e-01 | 96.6% | 86.5% |
| 2qtpA00 | 3.30.1330.110 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 | 0.54 | 44.0 | 3.79e-01 | 89.9% | 86.4% |
| 4lr4A02 | 2.60.120.1430 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 46.0 | 3.81e-01 | 97.8% | 91.1% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 37.0 | 3.63e-01 | 96.6% | 67.4% |
| 4cucA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.90e-01 | 93.3% | 68.1% |
| 2vbkA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.51 | 43.0 | 2.70e-01 | 94.4% | 24.9% |
| 5f1cA02 | 2.60.490.10 | Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain | 0.51 | 36.0 | 2.68e-01 | 77.5% | 69.7% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 34.0 | 3.46e-01 | 96.6% | 69.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4403284 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.62 | 44.0 | 4.30e-01 | 97.8% | 66.0% |
| 4820771 | 2484.1.1.27 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA | 0.60 | 53.0 | 4.15e-01 | 98.9% | 62.3% |
| 4562806 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.60 | 43.0 | 4.28e-01 | 100.0% | 72.3% |
| 4940108 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.60 | 39.0 | 3.92e-01 | 96.6% | 65.6% |
| 4046402 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.59 | 43.0 | 4.17e-01 | 96.6% | 68.0% |
| 4303954 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.59 | 52.0 | 3.40e-01 | 97.8% | 30.9% |
| 4382093 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.59 | 43.0 | 4.29e-01 | 100.0% | 72.6% |
| 3879998 | 304.127.1.3 ↗ | a+b two layers › Alpha-beta plaits › Notch heterodimerization domain › Notch heterodimerization domain › NODP | 0.57 | 48.0 | 4.31e-01 | 95.5% | 69.2% |
| 4973512 | 325.1.1.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like | 0.56 | 32.0 | 3.61e-01 | 96.6% | 75.4% |
| 8624 | 929.1.1.1 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin › Resistin | 0.55 | 40.0 | 4.05e-01 | 100.0% | 77.5% |
| 3980411 | 11.1.5.58 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF1120 | 0.55 | 46.0 | 3.77e-01 | 95.5% | 71.1% |
| 3599634 | 4261.1.1.4 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › Slowpoke_C | 0.55 | 43.0 | 4.17e-01 | 94.4% | 74.0% |
| 3497298 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.54 | 49.0 | 4.19e-01 | 100.0% | 75.7% |
| 3554985 | 929.1.1.4 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin › PCSK9_C2 | 0.53 | 41.0 | 4.46e-01 | 91.0% | 100.0% |
| 4072313 | 4261.1.1.4 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › Slowpoke_C | 0.53 | 44.0 | 4.55e-01 | 93.3% | 100.0% |
| 3306490 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.52 | 38.0 | 3.56e-01 | 96.6% | 61.8% |
| 3728593 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 45.0 | 3.83e-01 | 100.0% | 63.2% |
| 3768762 | 2003.1.5.89 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Anamorsin_N | 0.51 | 42.0 | 3.34e-01 | 96.6% | 45.1% |
D2
medium
residues 1-200_311-334_351-391
Domain cluster:
rep: MW015081.1__QPX48018.1__X__00053__D3-189_336-357
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05268.19 best | GP38 | 35.0 | 2.40e-08 | 66.4% | 71.8% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gq8A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.68 | 38.0 | 3.52e-01 | 98.1% | 44.3% |
| 3if5A02 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.66 | 23.0 | 4.06e-01 | 91.7% | 94.4% |
| 6m37B01 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.65 | 26.0 | 4.29e-01 | 95.1% | 100.0% |
| 4qtpD00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.64 | 26.0 | 3.99e-01 | 95.5% | 87.0% |
| 2pygA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.61 | 36.0 | 3.17e-01 | 99.6% | 40.4% |
| 2ookA00 | 3.40.50.10600 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SpoIIaa-like domains | 0.56 | 27.0 | 3.82e-01 | 94.7% | 94.4% |
| 3d1cA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 19.0 | 2.86e-01 | 95.8% | 71.1% |
| 7o79A01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.51 | 39.0 | 3.36e-01 | 100.0% | 51.9% |
| 3h09B02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.50 | 32.0 | 2.58e-01 | 100.0% | 33.1% |
| 5gkqB01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.50 | 39.0 | 3.42e-01 | 99.6% | 53.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3254891 | 207.6.1.8 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Nucleoporin_FG | 0.75 | 31.0 | 4.35e-01 | 94.0% | 75.6% |
| 5069671 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.61 | 33.0 | 3.37e-01 | 100.0% | 51.9% |
| 3599244 | 207.4.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like | 0.60 | 32.0 | 3.90e-01 | 100.0% | 78.2% |
| 3492291 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.59 | 30.0 | 3.89e-01 | 100.0% | 80.4% |
| 4678601 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.56 | 40.0 | 3.58e-01 | 72.1% | 55.0% |
| 4969571 | 2008.1.1.108 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 | 0.54 | 20.0 | 3.00e-01 | 94.0% | 76.4% |
| 3717030 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.54 | 34.0 | 3.67e-01 | 100.0% | 71.9% |
| 3667004 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.52 | 33.0 | 2.97e-01 | 81.5% | 46.3% |
| 3949141 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.52 | 39.0 | 3.23e-01 | 98.5% | 45.9% |
| 3978000 | 2486.1.1.2 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease | 0.50 | 32.0 | 3.60e-01 | 98.9% | 79.5% |
| 4002248 | 207.4.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC | 0.50 | 31.0 | 3.45e-01 | 98.9% | 75.3% |