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IMGVR_UViG_3300025644_000010-3300025644-Ga0209042_100064243

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300025644_000010-3300025644-Ga0209042_100064243 ↗
Kingdom:: archaea

Quality

73.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-62

PDB

Domain cluster: representative

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1pzwA00	3.40.1800.20	Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold ›	0.72	64.0	5.71e-01	100.0%	83.7%
1e7lA01	3.40.1800.10	Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases	0.70	61.0	5.35e-01	100.0%	66.3%
3hdeC00	1.10.530.40	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.60	41.0	2.99e-01	73.2%	27.4%
2bw2A02	3.30.70.1740	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Bypass-of-forespore C, C-terminal domain	0.60	43.0	3.92e-01	78.6%	94.9%
1kwgA02	3.40.50.880	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain	0.58	43.0	2.92e-01	78.6%	83.5%
4ht4A00	3.30.930.30	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 ›	0.57	39.0	2.74e-01	71.4%	87.6%
2qmlA00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.55	42.0	2.89e-01	82.1%	50.3%
2xzmZ00	3.30.1230.20	Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21	0.55	45.0	3.78e-01	91.1%	54.6%
1jnrA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.54	45.0	2.80e-01	98.2%	70.9%
3j7aZ00	3.30.1230.20	Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21	0.54	47.0	4.34e-01	98.2%	94.4%
1qhbA00	1.10.606.10	Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2	0.52	44.0	2.49e-01	92.9%	52.4%
1vm8B01	3.90.550.10	Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	0.52	40.0	2.47e-01	91.1%	61.5%
1l3aA00	2.30.31.10	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A	0.51	44.0	3.10e-01	94.6%	85.5%
2xzm600	2.20.25.100	Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27	0.51	38.0	3.47e-01	83.9%	76.2%
6fgcA02	3.90.105.10	Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2	0.51	34.0	3.44e-01	71.4%	72.4%
3bqjA01	2.40.510.10	Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses	0.51	38.0	2.75e-01	87.5%	75.9%
2uv4A00	3.10.580.10	Alpha Beta › Roll › CBS-domain › CBS-domain	0.50	38.0	2.86e-01	80.4%	77.6%
3nftA00	1.20.1710.10	Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like	0.50	38.0	2.53e-01	83.9%	95.0%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4961820	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.68	58.0	5.67e-01	100.0%	86.7%
4985875	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.62	49.0	5.21e-01	85.7%	100.0%
3240250	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.59	43.0	2.66e-01	78.6%	13.3%
3661533	376.1.1.19 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv	0.59	51.0	4.72e-01	96.4%	80.0%
3210408	377.1.1.5 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM	0.58	46.0	4.19e-01	87.5%	65.3%
3469465	2004.1.1.250 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd	0.57	41.0	2.34e-01	80.4%	12.8%
2673846	3167.1.1.1 ↗	a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e	0.56	46.0	4.03e-01	91.1%	65.1%
3599253	3167.1.1.0 ↗	a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e)	0.56	45.0	4.07e-01	91.1%	65.0%
4833007	3167.1.1.1 ↗	a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e	0.55	45.0	3.89e-01	91.1%	59.1%
3620967	376.1.3.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD	0.54	40.0	3.95e-01	89.3%	75.0%
5037502	4076.3.1.5 ↗	a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C	0.54	39.0	3.96e-01	75.0%	90.7%
2831825	3167.1.1.1 ↗	a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e	0.54	44.0	4.21e-01	92.9%	77.9%
4425756	101.1.2.764 ↗	alpha arrays › HTH › HTH › winged helix domain › RP-C	0.53	42.0	3.18e-01	91.1%	95.2%
4025412	275.1.1.0 ↗	a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	0.52	35.0	3.15e-01	75.0%	47.1%
3576850	3937.1.1.2 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin	0.51	43.0	2.76e-01	98.2%	77.2%
3487747	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	36.0	2.89e-01	78.6%	37.7%
3341695	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.51	35.0	3.12e-01	94.6%	49.4%
3497544	11.1.1.550 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3	0.51	36.0	2.83e-01	78.6%	36.3%
4308397	1074.1.1.4 ↗	alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_2_N	0.50	38.0	2.82e-01	87.5%	61.2%

D2 high residues 84-183

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5tr9A01	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.55	35.0	3.62e-01	100.0%	67.7%
1a8pA01	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.53	35.0	3.57e-01	100.0%	69.5%
2lccA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.51	26.0	2.98e-01	97.0%	63.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5040055	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.54	20.0	2.94e-01	100.0%	80.0%
3756676	4.1.1.118 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_15	0.52	28.0	2.85e-01	97.0%	49.0%
3679014	304.3.1.1 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA	0.51	26.0	2.93e-01	99.0%	64.0%