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IMGVR_UViG_3300025644_000489-3300025644-Ga0209042_10084671

Arc-Vir

IMGVR_UViG_3300025644_000489-3300025644-Ga0209042_10084671

Quality

88.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-66
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.69 62.0 4.64e-01 98.3% 49.6%
4obmA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.69 55.0 3.58e-01 88.1% 88.8%
2c9kA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.65 45.0 3.19e-01 74.6% 74.9%
3owvB00 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.64 51.0 3.46e-01 88.1% 67.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.64 48.0 4.22e-01 96.6% 53.9%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 43.0 3.53e-01 71.2% 40.0%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.63 54.0 4.07e-01 100.0% 85.2%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.60 51.0 3.94e-01 94.9% 43.0%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.53e-01 71.2% 66.7%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.60 40.0 3.78e-01 71.2% 69.3%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 51.0 3.94e-01 94.9% 81.5%
4dolA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.58 49.0 3.74e-01 100.0% 82.1%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 50.0 4.00e-01 96.6% 88.2%
2qg7B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 41.0 3.44e-01 93.2% 44.6%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 48.0 3.95e-01 100.0% 52.6%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 49.0 3.42e-01 100.0% 46.5%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 48.0 3.51e-01 100.0% 76.2%
3a57A00 2.60.270.30 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Vibrio parahaemolyticus thermostable direct hemolysin 0.55 47.0 3.53e-01 100.0% 46.1%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 48.0 3.41e-01 100.0% 88.0%
4u1eI00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.93e-01 100.0% 27.6%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 46.0 3.08e-01 100.0% 94.7%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 43.0 3.56e-01 96.6% 81.9%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.54 47.0 3.39e-01 100.0% 42.5%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.54 46.0 3.49e-01 100.0% 50.3%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 43.0 2.77e-01 88.1% 27.3%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 44.0 3.31e-01 93.2% 37.8%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 41.0 3.25e-01 100.0% 37.9%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.69e-01 93.2% 28.2%
2iayA00 3.30.1820.10 Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like 0.53 47.0 3.77e-01 100.0% 54.4%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 45.0 3.33e-01 100.0% 89.4%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 40.0 3.52e-01 96.6% 91.7%
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.51 43.0 3.77e-01 100.0% 66.3%
1jpdX01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 40.0 3.60e-01 96.6% 88.9%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 44.0 3.26e-01 98.3% 90.1%
2fsrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.15e-01 98.3% 66.7%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.51 44.0 3.27e-01 98.3% 57.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3718195 378.1.1.1 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.81 74.0 4.71e-01 100.0% 29.0%
3601605 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.73 66.0 4.33e-01 100.0% 28.5%
3451905 5015.1.1.0 extended segments › PetM subunit of the cytochrome b6f complex › PetM subunit of the cytochrome b6f complex › PetM subunit of the cytochrome b6f complex 0.71 46.0 4.98e-01 71.2% 80.0%
5045622 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.69 47.0 2.94e-01 71.2% 98.5%
3266198 6109.1.1.1 a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › ChAPs 0.69 61.0 4.30e-01 98.3% 57.2%
4949167 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 58.0 3.86e-01 98.3% 88.7%
4947966 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.65 57.0 4.08e-01 98.3% 60.6%
3726251 6109.1.1.1 a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › ChAPs 0.64 57.0 4.05e-01 98.3% 51.8%
3484299 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 55.0 3.30e-01 100.0% 22.8%
5053966 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 48.0 4.28e-01 93.2% 56.5%
3782542 6109.1.1.1 a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › ChAPs 0.64 56.0 3.91e-01 98.3% 51.6%
3492298 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 54.0 3.22e-01 100.0% 21.4%
3185455 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.63 56.0 3.95e-01 100.0% 65.9%
4979282 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.63 55.0 3.92e-01 98.3% 57.2%
5074751 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.63 55.0 3.94e-01 98.3% 59.8%
3069457 1053.1.1.0 beta barrels › Factor H-binding protein (fHbp) N-terminal beta-barrel domain › Factor H-binding protein (fHbp) N-terminal beta-barrel domain › Factor H-binding protein (fHbp) N-terminal beta-barrel domain 0.63 49.0 4.99e-01 98.3% 89.5%
3739446 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 52.0 4.44e-01 91.5% 64.2%
3404828 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.62 51.0 3.71e-01 96.6% 55.3%
3461126 216.1.1.26 a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 0.61 52.0 3.80e-01 96.6% 37.6%
5031205 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 53.0 3.71e-01 98.3% 54.8%
5045714 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 52.0 3.71e-01 98.3% 59.6%
4102293 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.60 53.0 3.73e-01 100.0% 82.6%
3966547 3523.1.1.0 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.60 52.0 4.38e-01 100.0% 57.0%
5066271 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 52.0 3.81e-01 98.3% 51.5%
4010148 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 50.0 3.62e-01 96.6% 56.7%
5050460 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 51.0 3.60e-01 98.3% 56.3%
5018285 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.59 51.0 4.20e-01 98.3% 96.4%
3719460 101.1.12.0 alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.59 50.0 3.99e-01 100.0% 90.0%
5051870 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 50.0 3.60e-01 98.3% 56.8%
1547989 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 51.0 3.21e-01 100.0% 24.9%
2125196 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.58 47.0 4.03e-01 91.5% 86.9%
3293091 9.1.1.33 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF1365 0.58 48.0 3.50e-01 100.0% 45.1%
4004011 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 46.0 3.73e-01 86.4% 50.9%
3797649 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 46.0 3.68e-01 91.5% 45.5%
3740914 5.1.4.80 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller 0.57 46.0 2.91e-01 94.9% 16.4%
3286033 11.1.6.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain 0.57 49.0 3.65e-01 98.3% 72.5%
5061151 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 48.0 3.71e-01 96.6% 61.4%
4958553 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.57 50.0 3.42e-01 100.0% 91.8%
4358798 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 44.0 4.06e-01 83.1% 86.7%
3735671 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.56 47.0 3.92e-01 91.5% 61.0%
5068963 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 46.0 3.95e-01 91.5% 80.0%
3198610 206.1.1.73 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, APH 0.56 46.0 3.15e-01 100.0% 34.5%
3268229 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.61e-01 91.5% 47.6%
3997580 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.56 49.0 3.51e-01 100.0% 66.3%
3834102 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.89e-01 100.0% 23.8%
5057564 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.55 48.0 3.56e-01 100.0% 38.1%
3186839 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 2.83e-01 94.9% 27.6%
4937316 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.55 43.0 3.74e-01 94.9% 94.3%
3256029 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.55 43.0 3.39e-01 96.6% 91.6%
3230977 4099.1.1.48 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Rgr-1_C 0.55 48.0 3.74e-01 100.0% 58.5%
4026378 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 2.60e-01 98.3% 17.6%
3610987 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.54 48.0 3.80e-01 100.0% 89.6%
4955311 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.54 43.0 3.71e-01 94.9% 94.3%
4126006 325.1.7.14 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid 0.54 41.0 4.05e-01 83.1% 83.1%
4338934 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 40.0 3.94e-01 79.7% 84.6%
5074619 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.54 45.0 3.66e-01 96.6% 88.3%
4297163 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.53 42.0 3.70e-01 98.3% 98.1%
3628139 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.53 47.0 3.43e-01 100.0% 38.1%
3618632 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.52 44.0 2.82e-01 100.0% 42.4%
4883391 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 44.0 3.89e-01 100.0% 76.3%
3841474 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 44.0 2.87e-01 100.0% 43.7%
5063673 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.52 40.0 3.42e-01 96.6% 85.0%
3590206 331.1.1.2 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans 0.51 43.0 3.27e-01 96.6% 38.7%
167858 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.51 43.0 3.40e-01 93.2% 81.6%
4131098 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.51 40.0 3.53e-01 94.9% 96.0%
3485137 2004.1.1.100 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NTPase_1 0.51 41.0 2.86e-01 96.6% 28.7%
3587399 331.1.1.2 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans 0.50 42.0 3.14e-01 96.6% 40.0%