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IMGVR_UViG_3300025657_000558-3300025657-Ga0208823_100381826

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300025657_000558-3300025657-Ga0208823_100381826 ↗
Kingdom:: archaea

Quality

87.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-44

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1pg5B02	2.30.30.20	Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain	0.64	46.0	4.34e-01	83.3%	77.2%
2c1iA02	3.90.640.30	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 ›	0.59	40.0	3.40e-01	73.8%	39.0%
2xzm901	6.20.50.180	Special › Other non-globular › N-terminal domain of TfIIb ›	0.59	40.0	3.42e-01	76.2%	41.7%
3gmiA02	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.57	42.0	2.73e-01	83.3%	29.2%
1d0qA00	3.90.580.10	Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain	0.55	40.0	3.04e-01	76.2%	67.6%
3llcA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.55	37.0	2.36e-01	73.8%	16.9%
6ln0A02	1.10.8.1190	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain	0.54	39.0	2.98e-01	78.6%	87.5%
4aghA00	2.30.31.10	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A	0.53	37.0	3.09e-01	76.2%	45.0%
4g7xB00	3.30.1150.10	Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 ›	0.53	37.0	2.98e-01	78.6%	52.0%
2f1rA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	34.0	2.44e-01	71.4%	93.9%
4jndA02	3.60.40.10	Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain	0.50	39.0	2.50e-01	100.0%	62.2%
1fokA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	36.0	2.88e-01	76.2%	48.3%
1biqA00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.50	37.0	2.36e-01	100.0%	67.6%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3333592	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.77	57.0	3.65e-01	83.3%	18.0%
4229239	2484.1.1.85 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC_III	0.67	46.0	2.93e-01	73.8%	13.6%
4185726	375.1.1.213 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS	0.66	48.0	4.77e-01	83.3%	75.6%
4031797	375.1.1.47 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC	0.60	44.0	4.17e-01	85.7%	63.6%
1530779	375.1.1.11 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27	0.60	40.0	3.10e-01	73.8%	29.6%
4140304	376.1.1.37 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C	0.58	42.0	3.43e-01	78.6%	63.5%
1807407	102.8.1.0 ↗	alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain	0.57	42.0	2.63e-01	83.3%	23.6%
3271694	314.1.1.0 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases	0.55	39.0	2.50e-01	76.2%	34.9%
3282426	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.54	38.0	2.60e-01	92.9%	17.8%
2464202	295.1.1.1 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4	0.53	42.0	3.53e-01	95.2%	57.8%
2526295	7098.1.1.1 ↗	alpha arrays › Replicase polyprotein 1a N-terminal helical domain › Replicase polyprotein 1a N-terminal helical domain › Replicase polyprotein 1a N-terminal helical domain › NSP2_gammaCoV	0.53	36.0	2.52e-01	71.4%	60.6%
4987025	3740.1.1.4 ↗	alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C	0.52	36.0	2.31e-01	78.6%	12.6%