←Back to structures
IMGVR_UViG_3300025659_000054-3300025659-Ga0209249_10024563
Arc-VirIMGVR_UViG_3300025659_000054-3300025659-Ga0209249_10024563
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-49_160-218
Domain cluster:
rep: MW900438.1__QVJ07757.1__S1R3Y_000049__00049__D3-41_139-198
D2
high
residues 52-158
Domain cluster:
rep: NC_023863.2__YP_009021671.1__CHOED_05__00005__D58-166
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pjyA00 | 2.60.120.1140 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 | 0.63 | 40.0 | 3.74e-01 | 99.1% | 52.7% |
| 4ei0A01 | 2.60.40.3550 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 | 0.59 | 45.0 | 4.14e-01 | 100.0% | 61.7% |
| 2b8mA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 42.0 | 4.20e-01 | 100.0% | 72.5% |
| 3rnsA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 40.0 | 4.03e-01 | 100.0% | 70.4% |
| 1o7dC02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 38.0 | 4.08e-01 | 100.0% | 80.9% |
| 3lwcA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 39.0 | 4.03e-01 | 100.0% | 73.8% |
| 5jzgA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 50.0 | 3.95e-01 | 100.0% | 69.9% |
| 2i45D00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 31.0 | 3.24e-01 | 98.1% | 56.6% |
| 1nxmA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 43.0 | 3.52e-01 | 100.0% | 45.4% |
| 2vvfA02 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 46.0 | 4.35e-01 | 100.0% | 75.8% |
| 1lr5B00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 35.0 | 3.10e-01 | 100.0% | 42.8% |
| 1fi2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 43.0 | 3.47e-01 | 100.0% | 43.8% |
| 2fqpA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 39.0 | 4.16e-01 | 100.0% | 84.2% |
| 1vj2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 39.0 | 3.90e-01 | 100.0% | 69.3% |
| 2vveA01 | 2.60.120.770 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 41.0 | 4.36e-01 | 100.0% | 91.4% |
| 4mloA01 | 2.60.120.810 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 40.0 | 3.56e-01 | 100.0% | 52.2% |
| 6lsvA01 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.55 | 45.0 | 3.24e-01 | 90.7% | 68.9% |
| 1r17A02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 48.0 | 4.18e-01 | 100.0% | 64.6% |
| 1bev100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 47.0 | 3.62e-01 | 100.0% | 63.1% |
| 5j09A00 | 2.60.120.950 | Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein | 0.53 | 47.0 | 4.08e-01 | 100.0% | 98.8% |
| 4ca9A00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.53 | 41.0 | 4.31e-01 | 100.0% | 91.8% |
| 1ajoA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 47.0 | 3.78e-01 | 100.0% | 72.6% |
| 1dcsA00 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.53 | 43.0 | 3.26e-01 | 91.6% | 72.4% |
| 2bnmA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 33.0 | 3.18e-01 | 99.1% | 55.0% |
| 5fljA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 40.0 | 3.40e-01 | 100.0% | 48.4% |
| 1j3qB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 41.0 | 3.42e-01 | 100.0% | 49.7% |
| 3i7dA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 31.0 | 2.77e-01 | 100.0% | 40.1% |
| 4j25F00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.51 | 40.0 | 3.44e-01 | 87.9% | 89.3% |
| 1vmfC00 | 2.60.120.460 | Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like | 0.50 | 45.0 | 4.19e-01 | 100.0% | 97.8% |
| 3kt7A01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.50 | 40.0 | 3.20e-01 | 90.7% | 80.9% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3604177 | 3386.2.1.0 ↗ | beta sandwiches › gp9 C-terminal domain-like › gp10 domain 2 and domain 3 › gp10 domain 2 and domain 3 | 0.78 | 50.0 | 6.19e-01 | 96.3% | 100.0% |
| 8624 | 929.1.1.1 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin › Resistin | 0.68 | 39.0 | 4.19e-01 | 100.0% | 65.2% |
| 1392686 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.63 | 42.0 | 3.76e-01 | 100.0% | 48.1% |
| 408734 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.62 | 39.0 | 3.70e-01 | 99.1% | 52.3% |
| 3227155 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.61 | 42.0 | 4.19e-01 | 100.0% | 67.8% |
| 3590148 | 11.1.5.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GBS104-like_Ig | 0.61 | 43.0 | 3.50e-01 | 100.0% | 39.5% |
| 5052981 | 7072.1.1.0 ↗ | beta sandwiches › N-terminal half of TgpA periplasmic domain › N-terminal half of TgpA periplasmic domain › N-terminal half of TgpA periplasmic domain | 0.60 | 42.0 | 3.69e-01 | 100.0% | 48.1% |
| 4266680 | 11.1.5.85 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C | 0.60 | 38.0 | 3.42e-01 | 100.0% | 46.2% |
| 4941672 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.60 | 40.0 | 3.80e-01 | 99.1% | 57.6% |
| 4567075 | 10.12.1.84 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom | 0.59 | 43.0 | 3.13e-01 | 100.0% | 28.4% |
| 4988645 | 11.1.1.33 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin | 0.58 | 52.0 | 4.37e-01 | 100.0% | 77.3% |
| None | — | 0.58 | 51.0 | 4.12e-01 | 100.0% | 93.2% | |
| 3972567 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.57 | 42.0 | 4.52e-01 | 100.0% | 91.1% |
| 3958603 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.57 | 40.0 | 4.52e-01 | 100.0% | 97.5% |
| 4608666 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.57 | 39.0 | 3.37e-01 | 100.0% | 44.0% |
| 4988382 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.56 | 40.0 | 3.95e-01 | 100.0% | 69.9% |
| 4960907 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 40.0 | 4.11e-01 | 100.0% | 81.0% |
| 5056380 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.55 | 34.0 | 3.47e-01 | 100.0% | 62.9% |
| 3878175 | 11.1.1.322 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ITGAX-like_Ig_3 | 0.54 | 44.0 | 3.67e-01 | 100.0% | 50.5% |
| 5049071 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 42.0 | 3.67e-01 | 83.2% | 87.5% |
| 3956820 | 10.32.1.269 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27503 | 0.53 | 42.0 | 4.21e-01 | 100.0% | 83.6% |
| 1043486 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.53 | 47.0 | 3.52e-01 | 100.0% | 65.3% |
| 1688024 | 11.1.5.38 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › SdrG_C_C | 0.53 | 49.0 | 4.06e-01 | 100.0% | 62.2% |
| 3536562 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 3.69e-01 | 97.2% | 54.4% |
| 4932768 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 45.0 | 4.14e-01 | 100.0% | 89.7% |
| 3239826 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.51 | 44.0 | 3.51e-01 | 100.0% | 46.4% |
| 5042048 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.51 | 46.0 | 3.72e-01 | 100.0% | 85.3% |
| 3285854 | 4182.1.1.0 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like | 0.50 | 45.0 | 4.27e-01 | 100.0% | 87.6% |
| 3879388 | 10.1.1.10 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM | 0.50 | 44.0 | 3.71e-01 | 100.0% | 57.2% |
| 3267244 | 12.3.1.46 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD | 0.50 | 45.0 | 3.45e-01 | 100.0% | 51.2% |
| 3217020 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 45.0 | 4.41e-01 | 100.0% | 99.1% |