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IMGVR_UViG_3300025659_000468-3300025659-Ga0209249_10041865

Arc-Vir

IMGVR_UViG_3300025659_000468-3300025659-Ga0209249_10041865

Identity

Kingdom:
archaea

Quality

74.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.73 51.0 5.39e-01 74.2% 87.3%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.72 49.0 4.03e-01 87.1% 39.3%
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.70 48.0 4.61e-01 72.6% 75.7%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.68 47.0 3.75e-01 72.6% 69.8%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.67 46.0 4.37e-01 98.4% 59.5%
4ap9A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.67 39.0 4.04e-01 74.2% 60.0%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.66 48.0 3.02e-01 77.4% 30.6%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.66 48.0 3.11e-01 77.4% 38.0%
5e0sB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.63 43.0 2.96e-01 83.9% 21.9%
2d8xA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.63 44.0 4.27e-01 74.2% 72.9%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.63 46.0 2.98e-01 77.4% 37.3%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 45.0 4.04e-01 77.4% 94.3%
1u6gC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 45.0 2.44e-01 93.5% 4.4%
6gpxB00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 51.0 3.31e-01 91.9% 58.6%
3wiwA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.59 46.0 2.77e-01 82.3% 96.5%
2co8A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.58 38.0 3.51e-01 75.8% 51.2%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 37.0 3.23e-01 71.0% 43.2%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.57 47.0 3.37e-01 93.5% 60.2%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.56 49.0 3.81e-01 100.0% 52.1%
2xqnT01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.56 39.0 3.92e-01 74.2% 98.4%
3mfqA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.56 40.0 3.10e-01 77.4% 40.4%
1dkqA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.54 48.0 3.85e-01 100.0% 87.9%
6ui4A02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 45.0 3.44e-01 95.2% 99.4%
2wr7C01 3.90.20.10 Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › 0.54 46.0 3.13e-01 98.4% 84.6%
1i24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 43.0 2.93e-01 91.9% 36.4%
3pe5A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.52 43.0 2.86e-01 93.5% 65.0%
1flcB00 3.90.20.10 Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › 0.51 46.0 3.36e-01 98.4% 53.7%
5wzoA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.50 42.0 3.35e-01 91.9% 69.1%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3699444 3755.3.1.6 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Flagellar_rod 0.82 56.0 3.74e-01 100.0% 20.5%
4959094 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.79 56.0 5.91e-01 100.0% 83.6%
4977157 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 48.0 5.46e-01 100.0% 95.6%
2035461 3380.1.1.1 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.71 50.0 5.24e-01 74.2% 85.7%
3637271 109.4.1.1544 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIP120, TPR_CAND1 0.70 51.0 2.76e-01 93.5% 4.4%
3494052 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 46.0 5.24e-01 98.4% 97.8%
4946701 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 52.0 3.90e-01 98.4% 35.2%
3615693 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.67 46.0 3.14e-01 71.0% 41.8%
3227443 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.66 48.0 4.83e-01 87.1% 75.0%
3213375 5001.1.1.44 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.66 48.0 3.08e-01 75.8% 37.9%
3735240 376.1.1.114 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf_RING-like 0.66 52.0 5.35e-01 100.0% 90.0%
4176445 247.1.1.44 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, RMMBL, Lactamase_B_6 0.66 43.0 2.71e-01 91.9% 12.9%
3559698 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.65 41.0 4.71e-01 95.2% 100.0%
4293536 4232.1.1.0 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.65 45.0 4.88e-01 98.4% 92.0%
3184080 109.4.1.1940 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIP120, TPR_CAND1, PF28359 0.64 45.0 2.41e-01 93.5% 3.5%
3918443 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 41.0 4.51e-01 98.4% 91.1%
3728775 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 47.0 4.27e-01 96.8% 58.8%
3207695 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.61 41.0 4.45e-01 91.9% 86.0%
5030984 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.61 35.0 2.49e-01 74.2% 19.5%
3566649 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.60 40.0 4.33e-01 98.4% 93.3%
5041606 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 50.0 5.01e-01 100.0% 89.2%
3492234 109.4.1.548 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIP120 0.60 46.0 2.81e-01 93.5% 12.1%
3790267 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.59 51.0 4.79e-01 96.8% 90.7%
3213060 5001.1.1.44 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.58 49.0 3.06e-01 93.5% 39.7%
3220364 6166.1.1.1 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.58 47.0 3.27e-01 88.7% 74.0%
5043836 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.58 45.0 4.31e-01 100.0% 73.3%
3526185 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.57 39.0 4.25e-01 96.8% 97.8%
4964739 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.57 47.0 3.09e-01 93.5% 89.1%
3530542 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 47.0 2.99e-01 93.5% 73.3%
3688034 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.56 42.0 3.58e-01 98.4% 49.0%
4936803 876.1.1.4 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 0.56 47.0 3.34e-01 93.5% 57.4%
2323970 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.56 50.0 4.95e-01 100.0% 92.3%
3248965 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.55 37.0 3.82e-01 71.0% 100.0%
3245748 316.1.1.25 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 0.55 48.0 3.36e-01 100.0% 69.8%
4890923 148.1.3.12 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_8 0.55 46.0 4.16e-01 91.9% 67.4%
5070516 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.55 37.0 3.83e-01 72.6% 76.7%
3767360 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.54 44.0 4.01e-01 98.4% 67.1%
3400082 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.54 36.0 3.09e-01 77.4% 43.0%
3789462 5069.1.1.4 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct 0.53 45.0 3.02e-01 100.0% 43.4%
3989236 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.53 40.0 2.63e-01 80.6% 47.5%
3876455 376.1.1.78 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zf_2nd_IFT121 0.52 34.0 3.55e-01 96.8% 74.5%
3211857 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.52 33.0 3.64e-01 100.0% 88.9%
5071881 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.52 37.0 3.75e-01 100.0% 80.0%
3332901 376.1.1.12 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING-like 0.52 35.0 3.63e-01 98.4% 80.0%
4253864 7581.1.1.6 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.51 36.0 2.97e-01 74.2% 87.8%
3307718 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.51 43.0 3.56e-01 98.4% 61.7%
3796016 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.51 40.0 4.26e-01 96.8% 98.2%