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IMGVR_UViG_3300025659_000635-3300025659-Ga0209249_10054883
Arc-VirIMGVR_UViG_3300025659_000635-3300025659-Ga0209249_10054883
Identity
- Kingdom:
- archaea
Quality
87.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-195
Domain cluster:
rep: NC_049449.1__YP_009882499.1__HYP78_gp14__00014__D4-183
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bxoA01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 37.0 | 4.30e-01 | 86.5% | 80.0% |
| 1j24A00 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 35.0 | 4.13e-01 | 88.6% | 88.0% |
| 2bmjA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 38.0 | 4.02e-01 | 85.5% | 78.7% |
| 3e48A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 38.0 | 3.98e-01 | 86.5% | 81.4% |
| 4gicA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.52 | 30.0 | 3.38e-01 | 98.4% | 73.6% |
| 7e52A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 32.0 | 3.75e-01 | 86.5% | 89.8% |
| 4impA02 | 3.40.50.11460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 39.0 | 3.79e-01 | 88.1% | 70.6% |
| 1z05A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 32.0 | 3.57e-01 | 80.8% | 77.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3960691 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.67 | 33.0 | 4.18e-01 | 71.5% | 78.2% |
| 4946872 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 49.0 | 5.31e-01 | 85.5% | 89.1% |
| 4046444 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 48.0 | 5.03e-01 | 88.6% | 87.8% |
| 4944210 | 2004.1.1.1198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU_D2 | 0.60 | 41.0 | 4.56e-01 | 86.5% | 88.0% |
| 3702525 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 40.0 | 4.45e-01 | 90.2% | 84.5% |
| 3245213 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 32.0 | 4.08e-01 | 77.2% | 93.3% |
| 4960131 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 53.0 | 4.96e-01 | 97.9% | 80.9% |
| 3702608 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.58 | 38.0 | 3.74e-01 | 89.1% | 59.3% |
| 3946135 | 7542.1.1.4 ↗ | a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Peptidase_S66C | 0.57 | 31.0 | 3.76e-01 | 73.6% | 80.8% |
| 5053468 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 40.0 | 4.09e-01 | 87.6% | 74.5% |
| 4986662 | 2007.2.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins | 0.56 | 37.0 | 4.08e-01 | 88.1% | 83.3% |
| 3385733 | 2007.1.14.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase | 0.56 | 28.0 | 3.06e-01 | 82.4% | 54.8% |
| 4946227 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.55 | 40.0 | 4.20e-01 | 86.5% | 82.3% |
| 11428 | 2487.1.1.18 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Peptidase_S66C | 0.54 | 30.0 | 3.49e-01 | 75.6% | 73.2% |
| 3276543 | 7575.1.1.1 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 | 0.54 | 45.0 | 3.97e-01 | 88.1% | 73.2% |
| 4163747 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.51 | 40.0 | 4.10e-01 | 85.0% | 84.3% |
| 3719011 | 2008.3.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Eukaryotic RPB5 N-terminal domain › Eukaryotic RPB5 N-terminal domain › RNA_pol_Rpb5_N | 0.51 | 44.0 | 4.60e-01 | 96.9% | 98.9% |
| 4043600 | 327.18.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A | 0.51 | 25.0 | 3.44e-01 | 81.3% | 100.0% |
| 4952144 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.50 | 33.0 | 3.86e-01 | 85.0% | 94.8% |
D2
high
residues 200-350
Domain cluster:
rep: ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00305__D55-230
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10592.15 best | AIPR | 84.4 | 1.60e-23 | 72.2% | 36.8% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nrfA00 | 2.60.40.4110 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 | 0.56 | 32.0 | 3.75e-01 | 88.7% | 80.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5016948 | 876.1.1.7 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › AIPR | 0.91 | 87.0 | 8.48e-01 | 98.7% | 100.0% |
| 3976508 | 876.1.1.7 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › AIPR | 0.89 | 86.0 | 8.55e-01 | 100.0% | 98.1% |
| 3941459 | 876.1.1.7 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › AIPR | 0.86 | 82.0 | 8.20e-01 | 99.3% | 97.4% |
| 3283779 | 876.1.1.9 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DndB | 0.73 | 60.0 | 6.34e-01 | 85.4% | 100.0% |
| 5076247 | 876.1.1.9 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DndB | 0.70 | 64.0 | 6.21e-01 | 98.0% | 99.4% |
| 5003677 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.62 | 28.0 | 3.94e-01 | 91.4% | 90.0% |
| 4927612 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 29.0 | 3.41e-01 | 88.7% | 71.0% |
| 3302370 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 25.0 | 3.25e-01 | 87.4% | 73.5% |
| 5081145 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 25.0 | 3.17e-01 | 100.0% | 71.1% |
| 3306325 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.53 | 24.0 | 3.02e-01 | 87.4% | 67.8% |
| 3367684 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.53 | 24.0 | 3.00e-01 | 87.4% | 69.4% |
D3
medium
residues 355-441
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10592.15 best | AIPR | 33.5 | 5.10e-08 | 98.9% | 31.6% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7krzA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 37.0 | 3.74e-01 | 94.3% | 65.5% |
| 2vqmA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.55 | 42.0 | 2.76e-01 | 81.6% | 78.3% |
| 5g0gA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.52 | 40.0 | 2.69e-01 | 82.8% | 88.1% |
| 2kxeA00 | 1.10.8.800 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › D-family DNA polymerase, DP1 subunit N-terminal domain | 0.51 | 30.0 | 3.23e-01 | 96.6% | 68.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5016949 | 148.1.3.408 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AIPR | 0.80 | 67.0 | 5.33e-01 | 88.5% | 50.0% |
| 5075274 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.56 | 41.0 | 3.44e-01 | 79.3% | 86.7% |
| 5050753 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.55 | 39.0 | 3.44e-01 | 75.9% | 77.1% |
| 3927660 | 2006.1.5.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl | 0.52 | 39.0 | 2.61e-01 | 81.6% | 79.5% |
| 3272811 | 3003.1.1.0 ↗ | a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | 0.51 | 35.0 | 3.43e-01 | 81.6% | 64.2% |
D4
medium
residues 442-570
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ae4A00 | 1.20.120.1920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UBAP1 SOUBA domain | 0.63 | 36.0 | 3.79e-01 | 92.2% | 61.4% |
| 3bhgA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.59 | 41.0 | 4.33e-01 | 71.3% | 83.5% |
| 4gdxA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.57 | 40.0 | 4.28e-01 | 96.9% | 84.7% |
| 1aoaA01 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.55 | 37.0 | 3.85e-01 | 99.2% | 74.6% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.54 | 42.0 | 4.35e-01 | 83.7% | 87.1% |
| 1t9xA05 | 1.20.1640.10 | Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain | 0.50 | 44.0 | 3.78e-01 | 100.0% | 59.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588332 | 5069.1.1.23 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF2798 | 0.60 | 43.0 | 4.18e-01 | 73.6% | 70.7% |
| 3998789 | 101.1.10.6 ↗ | alpha arrays › HTH › HTH › Cyclin-like › RB_A | 0.56 | 51.0 | 4.38e-01 | 100.0% | 69.3% |
| None | — | 0.54 | 42.0 | 3.29e-01 | 85.3% | 81.0% | |
| 3934845 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.53 | 42.0 | 3.34e-01 | 86.0% | 81.4% |
| 4026405 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.51 | 45.0 | 3.78e-01 | 96.9% | 70.7% |
| 4600416 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 45.0 | 3.88e-01 | 98.4% | 70.8% |
| 3291547 | 601.1.1.84 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF350 | 0.51 | 44.0 | 4.27e-01 | 97.7% | 91.7% |
| 4309259 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.50 | 44.0 | 3.85e-01 | 100.0% | 62.4% |
| 4980789 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.50 | 42.0 | 3.06e-01 | 100.0% | 29.4% |
| 5081021 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.50 | 37.0 | 3.62e-01 | 83.7% | 69.0% |