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IMGVR_UViG_3300025669_000046-3300025669-Ga0208904_100021237

Arc-Vir

IMGVR_UViG_3300025669_000046-3300025669-Ga0208904_100021237

Identity

Kingdom:
archaea

Quality

77.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-44
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tmaJ00 3.30.50.10 Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A 0.79 67.0 5.87e-01 100.0% 64.9%
2w0tA00 3.30.60.160 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.69 56.0 5.52e-01 97.4% 88.4%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.63 46.0 4.75e-01 79.5% 86.1%
3zg9A00 6.20.370.110 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.62 38.0 3.74e-01 100.0% 53.7%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.62 50.0 3.32e-01 100.0% 57.9%
4n4fA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 43.0 4.36e-01 79.5% 85.0%
2apoB00 2.20.28.40 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 0.57 36.0 3.32e-01 82.1% 40.0%
3vhtB02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 40.0 4.17e-01 97.4% 91.2%
2mknA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 41.0 4.10e-01 100.0% 81.8%
3hh2D04 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 38.0 3.24e-01 79.5% 74.3%
3kxyT00 6.20.290.10 Special › Other non-globular › Dna Ligase; domain 1 › 0.53 32.0 2.77e-01 94.9% 33.8%
1wigA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.52 41.0 3.56e-01 100.0% 68.5%
3k85A00 3.30.230.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 38.0 2.36e-01 89.7% 30.4%
2iqcA00 1.25.40.490 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 36.0 2.47e-01 79.5% 38.2%
1yx3A01 3.30.1420.10 Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain 0.50 38.0 3.83e-01 84.6% 85.4%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004198 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.79 60.0 6.32e-01 84.6% 91.4%
4155531 377.1.1.15 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG 0.77 65.0 5.99e-01 100.0% 74.0%
4314985 377.1.1.15 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG 0.76 63.0 6.11e-01 97.4% 83.7%
3262764 70.3.1.11 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET, zf-MYND 0.76 69.0 4.25e-01 100.0% 21.9%
5004690 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 57.0 5.97e-01 84.6% 91.4%
5018523 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 59.0 4.93e-01 100.0% 50.0%
3660246 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.74 63.0 5.86e-01 100.0% 96.0%
3183368 377.9.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.73 64.0 5.54e-01 100.0% 88.3%
3855126 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.72 57.0 5.91e-01 94.9% 100.0%
3291252 4107.1.1.1 ↗ alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.68 58.0 3.75e-01 97.4% 22.9%
3625637 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.68 58.0 5.44e-01 100.0% 78.0%
3714085 377.9.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.66 57.0 5.70e-01 97.4% 95.0%
3762289 386.1.1.106 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-FCS 0.66 56.0 5.55e-01 94.9% 97.5%
3777921 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 48.0 2.76e-01 82.1% 8.9%
4019347 376.1.1.12 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING-like 0.62 53.0 4.83e-01 100.0% 72.7%
3541 4107.1.1.1 ↗ alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.62 50.0 3.32e-01 100.0% 57.6%
5073000 4123.1.1.0 ↗ few secondary structure elements › E7 C-terminal domain-like › E7 C-terminal domain-like › E7 C-terminal domain-like 0.61 45.0 4.50e-01 82.1% 85.0%
4201209 375.6.1.1 ↗ few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › FlhC 0.60 40.0 4.32e-01 71.8% 96.7%
3337279 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 45.0 4.67e-01 84.6% 91.4%
3583377 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.59 44.0 3.83e-01 84.6% 58.5%
3503971 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 39.0 4.31e-01 79.5% 100.0%
3809619 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.58 44.0 4.05e-01 89.7% 67.3%
5050300 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 42.0 4.37e-01 82.1% 94.3%
3686351 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.57 47.0 4.72e-01 100.0% 100.0%
3425436 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 41.0 4.15e-01 82.1% 92.5%
3619241 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.56 37.0 3.21e-01 87.2% 39.1%
3545794 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.56 42.0 3.87e-01 100.0% 76.9%
4990542 377.1.1.128 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF2175 0.56 44.0 4.29e-01 92.3% 80.0%
5046014 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 40.0 4.01e-01 82.1% 87.5%
3643916 375.1.1.235 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADD_ATRX 0.55 44.0 4.41e-01 92.3% 95.0%
3165333 375.1.1.14 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p 0.55 36.0 3.79e-01 82.1% 77.1%
3468455 376.1.3.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX 0.54 44.0 4.42e-01 92.3% 95.0%
3939587 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.54 41.0 4.12e-01 97.4% 90.0%
4944281 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 3.59e-01 100.0% 72.5%
3252718 377.1.1.96 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF25999 0.51 40.0 4.03e-01 92.3% 92.5%
3796016 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.51 42.0 3.83e-01 100.0% 100.0%