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IMGVR_UViG_3300025669_000046-3300025669-Ga0208904_100021249

Arc-Vir

IMGVR_UViG_3300025669_000046-3300025669-Ga0208904_100021249

Quality

58.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-117
PDB
D2 high residues 310-365
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 49.0 5.13e-01 100.0% 93.9%
2vl6A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.58 44.0 4.66e-01 94.6% 100.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.45e-01 98.2% 76.5%
7vcoA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 38.0 2.94e-01 78.6% 44.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3846046 221.1.1.195 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › VCIP135_N 0.70 52.0 4.99e-01 98.2% 70.8%
3881976 375.1.1.142 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › VCIP135_N 0.68 51.0 4.83e-01 100.0% 67.1%
3187671 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 48.0 4.77e-01 100.0% 88.3%
5050857 4.1.1.95 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.58 49.0 3.87e-01 100.0% 49.2%
2756139 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 45.0 4.54e-01 98.2% 90.9%
3645395 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 45.0 4.11e-01 94.6% 96.2%
D3 medium residues 192-276
PDB
D4 medium residues 277-303_372-437
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 69.0 6.46e-01 96.8% 100.0%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 63.0 5.93e-01 88.2% 95.5%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 60.0 5.88e-01 87.1% 94.1%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 66.0 6.51e-01 97.8% 100.0%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 60.0 5.74e-01 88.2% 100.0%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 51.0 5.68e-01 89.2% 95.9%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 58.0 5.70e-01 89.2% 96.9%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 57.0 5.81e-01 89.2% 98.9%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 56.0 5.54e-01 89.2% 95.9%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 53.0 5.63e-01 98.9% 98.8%
4hceA00 2.40.50.860 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 54.0 4.91e-01 95.7% 100.0%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.63 51.0 5.25e-01 89.2% 100.0%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 48.0 4.57e-01 88.2% 70.8%
2kctA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 49.0 5.09e-01 90.3% 93.1%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 53.0 4.61e-01 96.8% 80.6%
4hspA00 2.40.50.870 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function (DUF3299) 0.61 55.0 4.70e-01 100.0% 97.3%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 46.0 4.68e-01 83.9% 100.0%
2qw7C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.59 46.0 4.66e-01 84.9% 100.0%
3m7nA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 50.0 5.19e-01 93.5% 100.0%
1enfA01 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 46.0 4.89e-01 86.0% 100.0%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.55 40.0 3.77e-01 76.3% 96.4%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 38.0 3.65e-01 71.0% 97.2%
5wrtB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.53 45.0 3.40e-01 94.6% 56.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 31.0 3.39e-01 95.7% 71.1%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 34.0 2.98e-01 95.7% 43.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030363 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.78 72.0 6.82e-01 100.0% 100.0%
3594029 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 71.0 6.84e-01 97.8% 99.0%
3244059 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.78 72.0 6.92e-01 100.0% 98.1%
5016563 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 71.0 6.52e-01 100.0% 94.2%
5016178 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 69.0 6.64e-01 97.8% 96.2%
4029733 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 71.0 6.55e-01 100.0% 93.9%
3604365 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 69.0 6.61e-01 97.8% 95.2%
4022913 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 70.0 6.46e-01 100.0% 93.9%
4938219 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 67.0 6.47e-01 97.8% 100.0%
3690510 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.74 61.0 5.77e-01 89.2% 93.6%
3814285 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.74 60.0 5.71e-01 88.2% 91.8%
3172086 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.73 66.0 6.16e-01 100.0% 84.3%
3594041 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 47.0 5.42e-01 84.9% 96.9%
4970159 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 62.0 6.24e-01 95.7% 97.9%
3963716 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 61.0 5.76e-01 93.5% 92.7%
3970847 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 51.0 5.66e-01 91.4% 100.0%
3164941 129.1.1.99 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › DUF4131 0.70 62.0 6.04e-01 93.5% 98.0%
5039056 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 59.0 6.18e-01 96.8% 100.0%
3518490 2.1.1.110 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › BRCA2DBD_OB2 0.70 63.0 5.88e-01 98.9% 88.7%
2330653 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.70 59.0 5.89e-01 90.3% 95.7%
3680255 2.1.1.67 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1_2 0.69 62.0 5.88e-01 97.8% 86.2%
3596264 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 56.0 5.36e-01 88.2% 85.5%
4988989 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 62.0 5.95e-01 97.8% 96.2%
3185246 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 62.0 5.56e-01 100.0% 80.8%
3276705 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.68 62.0 6.07e-01 100.0% 97.0%
3742662 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 58.0 5.34e-01 93.5% 95.0%
3700635 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 61.0 5.78e-01 100.0% 84.5%
3266828 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.67 55.0 5.17e-01 89.2% 72.2%
3583095 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 56.0 5.49e-01 90.3% 99.0%
4952176 2.18.1.0 beta barrels › OB-fold › OB domain in putative lipoprotein BF3042-related proteins › OB domain in putative lipoprotein BF3042-related proteins 0.66 51.0 5.56e-01 88.2% 100.0%
4535633 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 50.0 5.49e-01 89.2% 100.0%
3442989 2.1.1.42 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.65 60.0 4.85e-01 100.0% 95.3%
4246562 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 50.0 5.01e-01 92.5% 81.1%
5041532 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 58.0 5.25e-01 98.9% 100.0%
3598416 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 53.0 5.58e-01 92.5% 100.0%
3247017 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 49.0 5.28e-01 96.8% 100.0%
5036890 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 55.0 4.97e-01 96.8% 100.0%
5037634 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 49.0 5.09e-01 89.2% 94.1%
3445198 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 55.0 4.56e-01 100.0% 94.7%
3934825 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 53.0 4.95e-01 94.6% 78.3%
3623874 2.1.1.51 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.61 54.0 4.76e-01 96.8% 74.8%
4930381 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.61 49.0 4.94e-01 88.2% 92.5%
5008548 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 49.0 4.94e-01 89.2% 95.8%
3604459 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.61 49.0 4.67e-01 89.2% 81.8%
4999913 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 53.0 4.78e-01 95.7% 99.2%
5048438 2.1.1.51 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.60 52.0 4.63e-01 95.7% 92.6%
5067186 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.59 48.0 4.77e-01 92.5% 86.3%
4935709 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.59 47.0 4.62e-01 89.2% 81.0%
5024446 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.59 47.0 4.79e-01 88.2% 92.2%
5037256 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.59 47.0 4.82e-01 89.2% 93.3%
3970846 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 44.0 4.71e-01 87.1% 95.0%
147797 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.58 33.0 3.83e-01 96.8% 77.9%
5010568 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.58 46.0 4.63e-01 88.2% 88.4%
2544590 2.1.1.58 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF35_N 0.57 46.0 4.33e-01 90.3% 93.2%
3498900 2.3.1.0 beta barrels › OB-fold › TIMP-like › TIMP-like 0.52 47.0 3.92e-01 100.0% 56.4%
3608100 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.86e-01 96.8% 38.8%
D5 medium residues 489-513_759-874
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 37.0 3.76e-01 88.7% 62.9%
3nv9A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 43.0 3.43e-01 90.1% 76.5%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.51 21.0 2.83e-01 95.0% 71.2%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.51 39.0 3.93e-01 92.9% 81.6%
4itjB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 36.0 3.27e-01 72.3% 81.4%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4000036 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.52 39.0 4.03e-01 95.7% 82.2%
3919852 5000.3.1.1 alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2 0.51 41.0 3.80e-01 85.8% 100.0%
D6 medium residues 514-632_726-758
PDB
D7 medium residues 633-711
PDB