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IMGVR_UViG_3300025683_000070-3300025683-Ga0208564_100418913
Arc-VirIMGVR_UViG_3300025683_000070-3300025683-Ga0208564_100418913
Identity
- Kingdom:
- archaea
Quality
81.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-52
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ifeA02 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.77 | 62.0 | 4.00e-01 | 100.0% | 19.8% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.77 | 61.0 | 4.60e-01 | 100.0% | 36.1% |
| 4d8tA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.75 | 58.0 | 4.58e-01 | 100.0% | 40.4% |
| 3bzcA03 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.71 | 58.0 | 4.47e-01 | 100.0% | 38.3% |
| 2yhwA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.70 | 60.0 | 4.27e-01 | 100.0% | 31.1% |
| 6i3mG01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.70 | 57.0 | 3.63e-01 | 100.0% | 17.6% |
| 4m88A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.70 | 59.0 | 4.32e-01 | 100.0% | 35.0% |
| 2hoeA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 56.0 | 4.12e-01 | 100.0% | 36.6% |
| 2qtcA02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.66 | 46.0 | 3.07e-01 | 76.0% | 17.4% |
| 3r5xA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 47.0 | 4.10e-01 | 96.0% | 47.1% |
| 1xtzA01 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 53.0 | 3.86e-01 | 100.0% | 30.2% |
| 2fqxA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 56.0 | 3.82e-01 | 100.0% | 27.6% |
| 3d6iA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.65 | 46.0 | 3.68e-01 | 78.0% | 34.5% |
| 2w42B01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 49.0 | 3.59e-01 | 100.0% | 27.8% |
| 2c42A01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.64 | 54.0 | 3.50e-01 | 100.0% | 20.6% |
| 6ecpB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.64 | 44.0 | 3.23e-01 | 76.0% | 24.8% |
| 2yvaA00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.64 | 51.0 | 3.59e-01 | 98.0% | 37.8% |
| 3bjeA01 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.64 | 55.0 | 3.38e-01 | 100.0% | 62.8% |
| 1edzA02 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.63 | 43.0 | 3.26e-01 | 76.0% | 27.5% |
| 2vk1A01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.63 | 50.0 | 3.44e-01 | 100.0% | 24.6% |
| 1sqsA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.63 | 50.0 | 3.29e-01 | 90.0% | 76.2% |
| 5kolD00 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.63 | 49.0 | 3.49e-01 | 100.0% | 26.2% |
| 3rotA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 45.0 | 3.43e-01 | 100.0% | 30.4% |
| 3icoA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 51.0 | 3.38e-01 | 100.0% | 20.9% |
| 3egcA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 44.0 | 3.38e-01 | 100.0% | 30.1% |
| 1oywA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 51.0 | 3.89e-01 | 100.0% | 53.8% |
| 1ygpA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.61 | 51.0 | 3.14e-01 | 100.0% | 23.6% |
| 1aj6A00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.61 | 50.0 | 3.48e-01 | 100.0% | 79.4% |
| 4xxhA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 48.0 | 3.91e-01 | 100.0% | 42.7% |
| 4kyqA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.60 | 48.0 | 3.33e-01 | 100.0% | 24.3% |
| 3nd5A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.60 | 47.0 | 3.49e-01 | 94.0% | 70.4% |
| 1tvmA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 41.0 | 3.45e-01 | 76.0% | 39.8% |
| 7ml0001 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 48.0 | 3.21e-01 | 100.0% | 33.5% |
| 5z6bA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 39.0 | 2.76e-01 | 74.0% | 20.5% |
| 2lciA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 44.0 | 3.44e-01 | 100.0% | 35.1% |
| 3gtzA00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.57 | 47.0 | 3.73e-01 | 100.0% | 46.1% |
| 2ykgA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 45.0 | 3.74e-01 | 100.0% | 50.5% |
| 4fzvA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 44.0 | 3.05e-01 | 100.0% | 22.1% |
| 3g68B01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.56 | 44.0 | 3.09e-01 | 98.0% | 24.8% |
| 4p02B02 | 3.30.379.20 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › | 0.55 | 46.0 | 3.55e-01 | 98.0% | 42.6% |
| 2qxlB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 44.0 | 3.41e-01 | 100.0% | 40.3% |
| 3i3fB00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.55 | 42.0 | 3.41e-01 | 100.0% | 48.4% |
| 3dwgA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 39.0 | 2.83e-01 | 100.0% | 22.5% |
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.54 | 43.0 | 3.42e-01 | 100.0% | 44.2% |
| 4nmyA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 43.0 | 3.56e-01 | 100.0% | 50.0% |
| 4o32C00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 36.0 | 3.18e-01 | 78.0% | 42.9% |
| 4gs5A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.52 | 42.0 | 3.50e-01 | 100.0% | 56.2% |
| 4ruvA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 39.0 | 3.31e-01 | 98.0% | 77.4% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943513 | 2484.1.1.74 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tex_YqgF | 0.70 | 58.0 | 4.21e-01 | 100.0% | 32.7% |
| 1253199 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.70 | 59.0 | 4.41e-01 | 100.0% | 37.6% |
| 3241495 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.69 | 57.0 | 3.86e-01 | 100.0% | 23.9% |
| 3728135 | 7574.1.1.7 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_N | 0.68 | 54.0 | 3.72e-01 | 100.0% | 24.0% |
| 3480633 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 55.0 | 3.86e-01 | 100.0% | 26.7% |
| 3952847 | 320.2.1.0 ↗ | a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain | 0.66 | 53.0 | 4.65e-01 | 100.0% | 60.0% |
| 3997975 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.66 | 55.0 | 3.62e-01 | 100.0% | 21.7% |
| 5045762 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.65 | 51.0 | 3.86e-01 | 100.0% | 35.2% |
| 3930336 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.65 | 45.0 | 3.46e-01 | 76.0% | 37.7% |
| 3254762 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.65 | 48.0 | 3.13e-01 | 90.0% | 18.2% |
| 4980831 | 7574.1.1.0 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) | 0.65 | 55.0 | 3.53e-01 | 100.0% | 21.2% |
| 3419267 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.64 | 52.0 | 3.80e-01 | 94.0% | 32.7% |
| 10689 | 7574.1.1.4 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › POR_N | 0.64 | 54.0 | 3.50e-01 | 100.0% | 20.6% |
| 3288803 | 2007.1.2.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1 | 0.64 | 45.0 | 3.49e-01 | 100.0% | 30.8% |
| 4029795 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.63 | 51.0 | 3.35e-01 | 100.0% | 18.5% |
| 3692171 | 2004.1.1.428 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 | 0.63 | 52.0 | 3.26e-01 | 100.0% | 38.7% |
| 5013453 | 2498.2.1.0 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain | 0.62 | 50.0 | 3.52e-01 | 98.0% | 28.1% |
| 3423551 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.62 | 52.0 | 3.35e-01 | 100.0% | 22.4% |
| 3785944 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.61 | 48.0 | 3.53e-01 | 100.0% | 30.3% |
| 3255343 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.61 | 43.0 | 3.49e-01 | 78.0% | 38.1% |
| 3239177 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.61 | 49.0 | 3.02e-01 | 100.0% | 20.0% |
| 4093004 | 2004.1.1.231 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNase_J_b_CASP | 0.60 | 50.0 | 3.64e-01 | 100.0% | 54.4% |
| 3469975 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.60 | 45.0 | 3.67e-01 | 86.0% | 41.9% |
| 5069446 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.60 | 47.0 | 3.30e-01 | 90.0% | 39.4% |
| 3622963 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.58 | 49.0 | 3.03e-01 | 100.0% | 44.4% |
| 5008480 | 2004.1.1.233 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cas3-like_C_2 | 0.57 | 47.0 | 3.33e-01 | 100.0% | 41.7% |
| 3678321 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.57 | 40.0 | 3.11e-01 | 78.0% | 28.9% |
| 3252375 | 2003.1.10.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Ins134_P3_kin_N | 0.57 | 48.0 | 3.91e-01 | 98.0% | 92.0% |
| 4123075 | 2007.1.8.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 | 0.56 | 41.0 | 3.21e-01 | 100.0% | 34.4% |
| 4065695 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.55 | 45.0 | 3.21e-01 | 98.0% | 70.3% |
| 3903241 | 7516.1.1.8 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T | 0.55 | 45.0 | 2.87e-01 | 100.0% | 36.2% |
| 3730029 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.54 | 43.0 | 2.97e-01 | 96.0% | 56.0% |
| 1155906 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.52 | 42.0 | 3.50e-01 | 100.0% | 56.2% |
| 3777884 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.52 | 38.0 | 2.95e-01 | 84.0% | 32.6% |
D2
medium
residues 54-139
Domain cluster:
rep: OL597544.1__UUB23291.1__X__00001__D45-102