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IMGVR_UViG_3300025691_000011-3300025691-Ga0208826_100049832
Arc-VirIMGVR_UViG_3300025691_000011-3300025691-Ga0208826_100049832
Identity
- Kingdom:
- archaea
Quality
85.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-83
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ni8A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.74 | 60.0 | 4.91e-01 | 86.4% | 62.1% |
| 4fpwB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.73 | 59.0 | 4.65e-01 | 86.4% | 46.0% |
| 1x53A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.73 | 60.0 | 5.03e-01 | 87.7% | 60.3% |
| 3q63F00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.71 | 58.0 | 4.81e-01 | 87.7% | 61.9% |
| 3eliA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.71 | 58.0 | 4.75e-01 | 87.7% | 61.1% |
| 2m89A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.71 | 57.0 | 4.84e-01 | 87.7% | 61.9% |
| 2leqA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.65 | 53.0 | 4.35e-01 | 87.7% | 60.3% |
| 2bzyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 31.0 | 3.50e-01 | 95.1% | 61.3% |
| 3we5A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.62 | 51.0 | 4.31e-01 | 92.6% | 63.8% |
| 6nyoA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.60 | 50.0 | 3.91e-01 | 93.8% | 53.7% |
| 1xocA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 46.0 | 3.74e-01 | 82.7% | 85.8% |
| 4oevA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 46.0 | 3.72e-01 | 82.7% | 87.1% |
| 2yraA00 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.60 | 37.0 | 3.90e-01 | 79.0% | 68.9% |
| 1uqwA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 44.0 | 3.96e-01 | 77.8% | 83.0% |
| 4gl8A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.59 | 45.0 | 3.71e-01 | 82.7% | 86.4% |
| 2jozA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 48.0 | 4.56e-01 | 87.7% | 74.0% |
| 3zs6A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.59 | 46.0 | 3.62e-01 | 84.0% | 85.0% |
| 2rsxA00 | 3.10.450.420 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 42.0 | 3.33e-01 | 74.1% | 95.0% |
| 1dpeA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 44.0 | 3.96e-01 | 84.0% | 86.6% |
| 4qfkA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 44.0 | 3.91e-01 | 81.5% | 88.7% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 50.0 | 4.50e-01 | 100.0% | 87.7% |
| 5kzwA02 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.55 | 44.0 | 3.28e-01 | 90.1% | 82.2% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 38.0 | 4.22e-01 | 97.5% | 92.2% |
| 6cz7A01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.54 | 34.0 | 3.73e-01 | 91.4% | 80.6% |
| 7knlA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.53 | 45.0 | 4.08e-01 | 97.5% | 72.8% |
| 3v98A03 | 3.10.450.60 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.49e-01 | 81.5% | 100.0% |
| 5h5zA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 34.0 | 3.40e-01 | 74.1% | 63.6% |
| 4aqcB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 39.0 | 3.80e-01 | 85.2% | 84.4% |
| 1zuyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 34.0 | 3.90e-01 | 97.5% | 96.6% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.51 | 43.0 | 3.77e-01 | 100.0% | 80.9% |
| 4h61A00 | 3.10.450.580 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 | 0.51 | 36.0 | 3.15e-01 | 76.5% | 51.1% |
| 2kczA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 41.0 | 3.42e-01 | 91.4% | 85.8% |
| 4p7aA02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.50 | 38.0 | 3.64e-01 | 84.0% | 95.9% |
| 4hsrB01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 42.0 | 2.90e-01 | 98.8% | 97.0% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3956123 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.75 | 62.0 | 5.09e-01 | 87.7% | 60.7% |
| 4030578 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.75 | 61.0 | 5.00e-01 | 86.4% | 62.1% |
| 3292466 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.73 | 59.0 | 4.73e-01 | 86.4% | 56.1% |
| 4023490 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.73 | 59.0 | 4.91e-01 | 87.7% | 57.9% |
| 3271044 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.71 | 58.0 | 4.81e-01 | 87.7% | 57.1% |
| 410032 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.71 | 58.0 | 4.82e-01 | 87.7% | 62.3% |
| 3282239 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.71 | 58.0 | 4.83e-01 | 87.7% | 68.1% |
| 5019287 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.66 | 50.0 | 4.97e-01 | 81.5% | 92.9% |
| 3639154 | 331.4.1.27 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › VASt | 0.65 | 57.0 | 4.24e-01 | 96.3% | 67.8% |
| None | — | 0.62 | 46.0 | 3.35e-01 | 79.0% | 50.4% | |
| 4933462 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.61 | 46.0 | 3.53e-01 | 82.7% | 83.9% |
| 3710638 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.60 | 48.0 | 3.85e-01 | 90.1% | 95.4% |
| 5018757 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.60 | 46.0 | 3.66e-01 | 82.7% | 79.9% |
| 4507204 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.60 | 49.0 | 4.05e-01 | 92.6% | 51.6% |
| 3974939 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.60 | 46.0 | 3.55e-01 | 82.7% | 83.1% |
| 4021944 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.59 | 47.0 | 3.36e-01 | 85.2% | 79.2% |
| 3266323 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.58 | 44.0 | 3.91e-01 | 81.5% | 87.5% |
| 3467074 | 247.1.1.27 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DUF4336 | 0.57 | 43.0 | 2.88e-01 | 80.2% | 34.8% |
| 3593905 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.57 | 44.0 | 3.40e-01 | 85.2% | 51.8% |
| 3825746 | 247.1.1.27 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DUF4336 | 0.56 | 42.0 | 2.81e-01 | 81.5% | 25.2% |
| 4971973 | 2004.1.1.790 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GvpD_P-loop | 0.55 | 37.0 | 2.80e-01 | 71.6% | 92.4% |
| 5043415 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.54 | 46.0 | 4.11e-01 | 98.8% | 93.3% |
| 3346978 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 42.0 | 3.32e-01 | 88.9% | 48.6% |
| 3279701 | 319.1.1.16 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26059 | 0.53 | 32.0 | 3.28e-01 | 90.1% | 61.3% |
| 3929989 | 330.16.1.2 ↗ | a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › KAP | 0.53 | 41.0 | 4.07e-01 | 100.0% | 78.8% |
| 170027 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.53 | 41.0 | 3.44e-01 | 86.4% | 87.7% |
| 3736722 | 9.14.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W | 0.52 | 44.0 | 4.06e-01 | 100.0% | 92.7% |
| 3614448 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.51 | 40.0 | 2.64e-01 | 86.4% | 40.5% |
| 3824503 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.51 | 43.0 | 3.07e-01 | 97.5% | 82.1% |
| 3585016 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.50 | 33.0 | 3.72e-01 | 93.8% | 90.0% |