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IMGVR_UViG_3300025691_000011-3300025691-Ga0208826_100049833

Arc-Vir

IMGVR_UViG_3300025691_000011-3300025691-Ga0208826_100049833

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-57
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.81 67.0 6.67e-01 100.0% 92.0%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.81 71.0 5.94e-01 100.0% 96.5%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.77 67.0 5.83e-01 100.0% 72.4%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.75 65.0 5.69e-01 100.0% 72.4%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.74 65.0 6.06e-01 100.0% 80.0%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.70 59.0 4.68e-01 100.0% 54.1%
1i1gA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.67 56.0 4.98e-01 100.0% 93.5%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.67 44.0 4.10e-01 100.0% 51.5%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.63 51.0 3.14e-01 95.9% 26.0%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.63 53.0 5.31e-01 100.0% 95.9%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 48.0 4.12e-01 100.0% 50.6%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 50.0 4.06e-01 100.0% 46.8%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.62 52.0 3.24e-01 100.0% 31.3%
3doaA03 3.40.970.40 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like 0.61 39.0 4.07e-01 100.0% 72.1%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.61 50.0 4.20e-01 100.0% 51.6%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 3.96e-01 100.0% 48.2%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.60 48.0 4.45e-01 100.0% 69.7%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.59 47.0 3.43e-01 100.0% 34.9%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.01e-01 100.0% 47.1%
3snoA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.59 44.0 3.37e-01 81.6% 94.2%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.59 50.0 5.01e-01 100.0% 96.0%
1yuzA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.59 39.0 4.30e-01 98.0% 89.5%
1wx9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 49.0 4.20e-01 100.0% 74.4%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 49.0 3.06e-01 100.0% 28.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 46.0 3.35e-01 98.0% 46.1%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 46.0 2.83e-01 100.0% 83.2%
2kd0A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 45.0 4.15e-01 100.0% 88.7%
1vziA01 2.20.28.100 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain 0.56 39.0 4.23e-01 95.9% 97.4%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 41.0 3.62e-01 100.0% 51.7%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 44.0 3.93e-01 100.0% 90.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 46.0 3.84e-01 100.0% 92.4%
1g0dA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.34e-01 100.0% 43.8%
5eliA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.45e-01 100.0% 59.8%
5t89Y06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.67e-01 100.0% 58.7%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 39.0 2.91e-01 79.6% 92.2%
3nkuA00 1.10.357.170 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.53 43.0 3.08e-01 100.0% 51.7%
2kp5A00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.53 39.0 3.33e-01 100.0% 45.1%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.53 42.0 3.96e-01 95.9% 92.3%
4ccjA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.51 37.0 2.53e-01 100.0% 17.9%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.92 76.0 7.60e-01 100.0% 86.0%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.89 82.0 7.39e-01 100.0% 87.7%
4995672 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.85 69.0 6.89e-01 100.0% 86.0%
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.85 68.0 7.12e-01 98.0% 95.6%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.83 74.0 7.14e-01 100.0% 96.4%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 73.0 6.89e-01 100.0% 94.8%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 73.0 6.30e-01 100.0% 72.0%
3987406 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.82 70.0 6.14e-01 98.0% 78.7%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 73.0 6.69e-01 100.0% 87.3%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.81 73.0 5.63e-01 100.0% 52.4%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 72.0 6.73e-01 100.0% 91.7%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.81 63.0 6.47e-01 100.0% 93.3%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.81 68.0 6.78e-01 100.0% 90.0%
119284 3115.2.1.1 a+b two layers › GP2-like › GP2 › GP2 › RNA_pol_inhib 0.81 66.0 6.26e-01 100.0% 76.3%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 72.0 6.78e-01 100.0% 93.2%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.81 73.0 6.44e-01 100.0% 78.6%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 72.0 6.04e-01 100.0% 67.5%
2527501 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 72.0 5.59e-01 100.0% 52.9%
5030993 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 72.0 6.11e-01 100.0% 68.8%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.81 62.0 6.40e-01 100.0% 93.3%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.80 70.0 6.13e-01 100.0% 73.3%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.80 71.0 6.54e-01 100.0% 85.9%
4996552 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.80 71.0 5.90e-01 100.0% 64.7%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.79 70.0 5.53e-01 100.0% 54.5%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.78 69.0 6.02e-01 100.0% 73.3%
5015713 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.78 67.0 6.35e-01 100.0% 96.7%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.78 68.0 6.50e-01 100.0% 94.8%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.77 59.0 6.06e-01 100.0% 93.3%
3968768 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.74 65.0 5.66e-01 100.0% 96.0%
4979507 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.73 63.0 4.49e-01 100.0% 34.2%
4962335 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.73 61.0 5.66e-01 100.0% 76.9%
3235447 821.1.1.8 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd 0.70 54.0 4.45e-01 100.0% 46.7%
3942988 4187.2.1.1 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.67 52.0 4.86e-01 100.0% 67.7%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 53.0 5.28e-01 100.0% 98.0%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.64 51.0 5.01e-01 100.0% 86.2%
3213315 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 54.0 4.69e-01 100.0% 100.0%
2723970 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.64 54.0 4.14e-01 100.0% 49.6%
4024026 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.63 54.0 3.36e-01 100.0% 24.6%
4990489 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 54.0 5.37e-01 100.0% 100.0%
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.62 51.0 4.70e-01 100.0% 100.0%
3604642 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 49.0 5.03e-01 100.0% 97.8%
3691249 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.62 51.0 3.89e-01 100.0% 36.9%
3789334 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.61 51.0 4.14e-01 100.0% 46.7%
142425 11.1.1.58 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-APP,V-set 0.61 50.0 3.88e-01 100.0% 42.9%
5029262 4114.1.1.0 a+b two layers › PHP14-like › PHP14-like › PHP14-like 0.60 48.0 3.85e-01 100.0% 54.6%
5011747 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.59 48.0 4.03e-01 100.0% 51.1%
3719741 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 50.0 4.87e-01 100.0% 96.4%
1179504 4020.1.1.1 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 0.59 44.0 3.24e-01 81.6% 81.4%
3958896 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.59 46.0 4.40e-01 93.9% 75.0%
5027281 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 44.0 4.21e-01 100.0% 70.7%
3187671 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 48.0 4.62e-01 100.0% 88.3%
3397051 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.58 47.0 2.82e-01 100.0% 87.2%
3244077 375.1.1.58 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.58 48.0 4.58e-01 100.0% 88.3%
2640865 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 49.0 4.76e-01 100.0% 96.4%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.56 43.0 4.01e-01 100.0% 68.0%
4178430 223.3.1.8 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.56 40.0 2.95e-01 81.6% 31.0%
3422239 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.55 44.0 2.98e-01 98.0% 95.7%
3666346 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.55 46.0 2.82e-01 100.0% 33.4%
3699329 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.55 46.0 2.85e-01 100.0% 13.2%
3738005 3868.1.1.1 a+b three layers › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mhr1 0.54 47.0 3.34e-01 100.0% 38.7%
4955225 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.54 43.0 2.78e-01 98.0% 17.6%
3899607 11.1.1.117 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EpoR_lig-bind 0.54 42.0 3.47e-01 100.0% 44.8%
5059237 3457.1.1.3 alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II 0.53 41.0 2.54e-01 91.8% 57.0%
3801700 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 44.0 2.78e-01 100.0% 58.3%
3180388 3868.1.1.1 a+b three layers › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mhr1 0.51 39.0 2.96e-01 100.0% 31.1%