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IMGVR_UViG_3300025691_000011-3300025691-Ga0208826_10004989

Arc-Vir

IMGVR_UViG_3300025691_000011-3300025691-Ga0208826_10004989

Quality

93.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-88
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 66.0 6.27e-01 100.0% 75.5%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 71.0 6.52e-01 100.0% 77.1%
1z9fA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.78 66.0 6.62e-01 100.0% 88.8%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 71.0 5.49e-01 100.0% 73.2%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 67.0 6.70e-01 100.0% 91.1%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 65.0 6.45e-01 100.0% 91.1%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 69.0 6.22e-01 100.0% 86.1%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 34.0 4.01e-01 87.4% 61.3%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 63.0 6.10e-01 100.0% 81.4%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 68.0 6.24e-01 100.0% 83.8%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 54.0 4.43e-01 100.0% 42.4%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 59.0 5.63e-01 100.0% 73.8%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 65.0 6.47e-01 100.0% 93.4%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 63.0 6.08e-01 100.0% 84.4%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 66.0 6.09e-01 100.0% 85.5%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 65.0 6.19e-01 100.0% 87.4%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 65.0 6.25e-01 100.0% 89.9%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 64.0 6.38e-01 98.9% 94.5%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 64.0 4.78e-01 100.0% 45.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 40.0 4.40e-01 100.0% 71.0%
4pofA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 57.0 5.40e-01 100.0% 81.7%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 50.0 4.44e-01 81.6% 93.6%
2e2dC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 59.0 5.74e-01 100.0% 94.7%
5uj1A03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.63 52.0 4.10e-01 87.4% 92.4%
1eu3A02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 49.0 5.08e-01 100.0% 95.0%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.60 40.0 3.04e-01 70.1% 34.6%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.58 41.0 3.05e-01 75.9% 30.5%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.58 41.0 3.36e-01 92.0% 41.7%
5fkaC02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 45.0 4.67e-01 100.0% 93.8%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 48.0 4.42e-01 93.1% 98.3%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 50.0 4.48e-01 95.4% 95.0%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.56 35.0 3.47e-01 87.4% 59.3%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.89e-01 90.8% 37.3%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 36.0 3.79e-01 92.0% 74.7%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 43.0 4.10e-01 89.7% 94.3%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.85e-01 97.7% 34.4%
4xa2A01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.52 33.0 3.07e-01 89.7% 48.7%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 30.0 3.61e-01 82.8% 87.7%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 41.0 3.84e-01 97.7% 70.4%
3qz4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 2.90e-01 90.8% 34.0%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4138994 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.86 64.0 7.09e-01 96.6% 95.7%
159268 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.79 71.0 5.25e-01 100.0% 40.8%
5078989 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.79 67.0 5.68e-01 100.0% 58.5%
3741507 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.78 72.0 6.85e-01 100.0% 93.0%
4618920 2.1.1.127 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.77 62.0 5.38e-01 100.0% 57.7%
4187609 2.1.1.127 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.76 61.0 5.99e-01 100.0% 78.9%
174115 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.76 66.0 6.69e-01 100.0% 95.3%
3963927 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.76 65.0 5.96e-01 100.0% 71.8%
4137219 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.76 69.0 6.60e-01 100.0% 93.0%
4562544 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 68.0 6.16e-01 100.0% 73.9%
5035149 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 67.0 6.51e-01 100.0% 88.4%
4137022 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 69.0 5.75e-01 100.0% 76.6%
3585962 2.1.1.42 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.75 68.0 5.52e-01 100.0% 71.2%
3690510 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.74 69.0 6.33e-01 100.0% 87.3%
3750534 2.1.1.257 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30832 0.74 67.0 5.78e-01 100.0% 72.6%
5058787 2.1.1.85 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.74 59.0 5.46e-01 100.0% 67.3%
2845667 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.74 68.0 6.28e-01 100.0% 81.7%
4980055 2.1.1.111 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.74 64.0 5.90e-01 100.0% 74.5%
4106730 264.2.1.1 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.74 52.0 4.44e-01 73.6% 85.9%
4951486 2.1.1.127 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.73 61.0 5.63e-01 100.0% 70.9%
3600626 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 68.0 6.48e-01 100.0% 92.0%
3448049 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.73 68.0 6.33e-01 100.0% 87.6%
3972959 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 59.0 5.46e-01 100.0% 69.1%
3365669 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.73 68.0 6.19e-01 100.0% 85.5%
3989249 2.1.1.85 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.72 59.0 5.40e-01 100.0% 67.0%
3514126 2.1.1.42 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.72 67.0 5.60e-01 100.0% 70.7%
3164580 2.1.1.85 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.71 58.0 5.33e-01 100.0% 67.8%
4064637 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 63.0 5.27e-01 100.0% 57.9%
3619317 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 64.0 5.41e-01 100.0% 62.8%
3921372 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 65.0 5.78e-01 100.0% 75.8%
4319566 2.1.1.290 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29066 0.70 65.0 5.39e-01 100.0% 64.8%
3666058 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.70 60.0 5.89e-01 100.0% 86.3%
4031715 2.1.1.85 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.70 57.0 5.24e-01 100.0% 68.2%
3595817 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 64.0 5.93e-01 100.0% 91.8%
4626934 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 65.0 6.05e-01 100.0% 91.4%
3947879 2.1.1.85 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.70 56.0 5.18e-01 98.9% 68.2%
3317450 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 57.0 5.22e-01 100.0% 68.2%
4204001 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.69 51.0 4.20e-01 77.0% 88.0%
3488538 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 63.0 5.44e-01 100.0% 66.2%
5013993 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 63.0 5.79e-01 100.0% 81.8%
3604594 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 59.0 5.58e-01 100.0% 78.1%
3624583 2.1.1.23 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.67 60.0 4.95e-01 100.0% 59.4%
4127161 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 59.0 5.70e-01 100.0% 92.0%
3789933 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.65 42.0 3.94e-01 87.4% 54.3%
3601108 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 59.0 5.52e-01 100.0% 86.7%
3871082 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.64 48.0 4.06e-01 80.5% 84.0%
3702502 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.64 57.0 5.49e-01 100.0% 90.0%
5047301 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 57.0 5.73e-01 100.0% 96.7%
3956143 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 53.0 5.25e-01 100.0% 90.0%
4084495 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.61 54.0 5.13e-01 100.0% 90.5%
3173646 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 53.0 4.27e-01 95.4% 93.3%
3800763 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.61 56.0 3.88e-01 100.0% 70.9%
5846 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.61 50.0 4.34e-01 88.5% 92.4%
5083710 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.61 42.0 2.95e-01 81.6% 23.4%
4656484 1.1.1.5 beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.61 41.0 3.47e-01 71.3% 70.7%
3935534 375.1.9.2 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › SANTA 0.60 42.0 3.69e-01 98.9% 47.4%
3499841 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 41.0 4.13e-01 72.4% 68.9%
4330094 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 41.0 4.11e-01 95.4% 70.0%
3927710 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 47.0 3.91e-01 94.3% 75.2%
3385295 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 45.0 3.30e-01 89.7% 43.0%
5029482 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 35.0 3.67e-01 96.6% 71.2%
3611624 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 48.0 4.11e-01 95.4% 97.8%
3244569 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 42.0 4.31e-01 96.6% 85.9%
4000010 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 35.0 3.62e-01 86.2% 70.0%
5000965 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.54 35.0 3.52e-01 71.3% 64.4%
3622477 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.54 45.0 3.26e-01 92.0% 52.2%
3605420 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.53 44.0 3.14e-01 88.5% 95.2%
4524129 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 40.0 3.95e-01 94.3% 73.7%
865437 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.53 42.0 3.50e-01 95.4% 49.7%
3819309 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.52 43.0 4.35e-01 98.9% 90.6%
3355925 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.52 44.0 2.99e-01 94.3% 92.0%
3364229 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 43.0 2.92e-01 89.7% 33.4%
5078009 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.52 44.0 2.97e-01 96.6% 47.0%
4797813 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.51 30.0 3.61e-01 82.8% 87.7%
3345244 5.1.8.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › FBA_1 0.50 42.0 3.52e-01 89.7% 71.0%