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IMGVR_UViG_3300025702_000242-3300025702-Ga0209203_10094571
Arc-VirIMGVR_UViG_3300025702_000242-3300025702-Ga0209203_10094571
Identity
- Kingdom:
- archaea
Quality
76.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-115
Domain cluster:
rep: IMGVR_UViG_3300028564_001292-3300028564-Ga0255344_10192301__D23-111
D2
high
residues 130-253
Domain cluster:
rep: IMGVR_UViG_3300009696_000618-3300009696-Ga0116177_1000452211__D3-16_124-250
D3
high
residues 311-437
Domain cluster:
rep: Salt_Pond_R2_restored_H2O_MG_scaffold_3_prodigal-single.1__X__X__00163__D233-373
D4
high
residues 465-498_534-577
D5
high
residues 598-648
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tu3B01 | 3.30.720.80 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.67 | 49.0 | 4.36e-01 | 96.1% | 53.9% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 46.0 | 4.37e-01 | 88.2% | 63.5% |
| 1k8kD02 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.64 | 55.0 | 4.15e-01 | 100.0% | 74.8% |
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.64 | 53.0 | 4.43e-01 | 96.1% | 63.0% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.63 | 53.0 | 4.07e-01 | 96.1% | 47.1% |
| 1gyvA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.62 | 51.0 | 3.99e-01 | 96.1% | 75.0% |
| 1wv4B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 47.0 | 3.47e-01 | 88.2% | 60.4% |
| 3ml4C01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 51.0 | 4.06e-01 | 96.1% | 69.4% |
| 2yzyA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.61 | 50.0 | 3.51e-01 | 92.2% | 28.8% |
| 1y4wA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.61 | 49.0 | 3.53e-01 | 94.1% | 64.8% |
| 4eqvA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.60 | 48.0 | 3.40e-01 | 92.2% | 68.2% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 47.0 | 4.19e-01 | 88.2% | 69.3% |
| 5i0dA05 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 49.0 | 3.68e-01 | 96.1% | 77.0% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.60 | 50.0 | 4.42e-01 | 98.0% | 86.1% |
| 2l3tA02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 52.0 | 4.23e-01 | 100.0% | 82.0% |
| 1vhzA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.60 | 43.0 | 3.00e-01 | 76.5% | 61.8% |
| 2pm6A00 | 1.25.40.1030 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 41.0 | 2.47e-01 | 72.5% | 10.4% |
| 3u2gA02 | 2.60.98.40 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain | 0.60 | 49.0 | 3.79e-01 | 100.0% | 70.5% |
| 3vsfC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.59 | 50.0 | 3.05e-01 | 96.1% | 26.6% |
| 1fu1A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.58 | 46.0 | 3.69e-01 | 94.1% | 89.8% |
| 4rljB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 46.0 | 3.48e-01 | 96.1% | 94.6% |
| 2wxwA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.57 | 47.0 | 3.37e-01 | 94.1% | 64.6% |
| 6eufA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 44.0 | 2.81e-01 | 94.1% | 26.6% |
| 5hkeA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.56 | 47.0 | 2.97e-01 | 100.0% | 72.6% |
| 4mxtA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 48.0 | 3.32e-01 | 98.0% | 73.3% |
| 3kuvB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 43.0 | 3.35e-01 | 92.2% | 83.5% |
| 3it8D01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.56 | 45.0 | 3.20e-01 | 94.1% | 84.4% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.55 | 49.0 | 3.80e-01 | 100.0% | 87.6% |
| 6nu8A02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.55 | 47.0 | 3.47e-01 | 100.0% | 75.5% |
| 3o6uC00 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.55 | 45.0 | 3.58e-01 | 100.0% | 89.1% |
| 3v0aB04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 45.0 | 3.34e-01 | 100.0% | 89.1% |
| 3k67A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 43.0 | 3.22e-01 | 96.1% | 81.4% |
| 3e0jA01 | 3.60.21.50 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › | 0.53 | 41.0 | 2.55e-01 | 84.3% | 86.3% |
| 4hntA04 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.53 | 42.0 | 3.53e-01 | 96.1% | 81.2% |
| 5aj3E01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 42.0 | 3.78e-01 | 96.1% | 85.2% |
| 1o8vA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 41.0 | 3.19e-01 | 94.1% | 59.4% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4138513 | 5.1.4.309 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF29630 | 0.76 | 65.0 | 3.80e-01 | 96.1% | 17.8% |
| 3259482 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.75 | 67.0 | 5.56e-01 | 98.0% | 75.3% |
| 3589569 | 243.3.1.13 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 | 0.73 | 55.0 | 5.20e-01 | 92.2% | 68.3% |
| 3715021 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.72 | 54.0 | 3.59e-01 | 80.4% | 30.4% |
| 4048802 | 5.1.4.369 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N | 0.72 | 62.0 | 3.38e-01 | 96.1% | 8.8% |
| None | — | 0.71 | 61.0 | 3.65e-01 | 96.1% | 22.6% | |
| 4532557 | 5.1.4.307 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 | 0.71 | 61.0 | 3.54e-01 | 96.1% | 24.1% |
| 3599752 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.69 | 60.0 | 3.53e-01 | 96.1% | 18.4% |
| 3716012 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.69 | 60.0 | 3.54e-01 | 98.0% | 21.3% |
| 5002402 | 3153.1.1.0 ↗ | a+b two layers › PipX › PipX › PipX | 0.69 | 58.0 | 5.12e-01 | 96.1% | 68.0% |
| 3498837 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.68 | 57.0 | 3.19e-01 | 96.1% | 11.7% |
| 3400912 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.67 | 56.0 | 3.69e-01 | 96.1% | 24.5% |
| 3988706 | 243.3.1.13 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 | 0.66 | 49.0 | 4.44e-01 | 92.2% | 58.6% |
| 4968133 | 4312.1.1.1 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin | 0.66 | 54.0 | 4.51e-01 | 94.1% | 60.2% |
| 3291057 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.65 | 50.0 | 4.55e-01 | 84.3% | 61.4% |
| 3479101 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.65 | 57.0 | 4.34e-01 | 100.0% | 78.3% |
| 3926175 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 39.0 | 3.35e-01 | 74.5% | 35.3% |
| 4799109 | 5.1.3.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neuraminidase | 0.64 | 53.0 | 3.99e-01 | 96.1% | 58.3% |
| 3396360 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.63 | 53.0 | 4.06e-01 | 100.0% | 63.8% |
| 3987799 | 4221.1.1.1 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 | 0.63 | 49.0 | 4.52e-01 | 90.2% | 67.1% |
| 4031480 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.62 | 50.0 | 4.19e-01 | 90.2% | 57.8% |
| 3323488 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.62 | 54.0 | 3.30e-01 | 96.1% | 24.0% |
| 3474038 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.62 | 53.0 | 3.87e-01 | 96.1% | 57.1% |
| 3640405 | 5.1.4.309 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF29630 | 0.61 | 51.0 | 2.96e-01 | 96.1% | 15.2% |
| 4069753 | 295.1.1.2 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA | 0.61 | 50.0 | 3.80e-01 | 96.1% | 40.7% |
| 4941936 | 4.1.1.493 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29241 | 0.61 | 51.0 | 4.30e-01 | 100.0% | 80.0% |
| 3251443 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.60 | 48.0 | 3.73e-01 | 94.1% | 52.8% |
| 4018808 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.58 | 47.0 | 3.74e-01 | 96.1% | 57.5% |
| 3945059 | 9.1.1.6 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE | 0.58 | 48.0 | 3.89e-01 | 96.1% | 63.8% |
| 3266788 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.58 | 47.0 | 3.66e-01 | 96.1% | 41.9% |
| 3203065 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.58 | 47.0 | 3.60e-01 | 96.1% | 52.6% |
| 3261529 | 5.1.5.27 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N | 0.57 | 47.0 | 2.83e-01 | 94.1% | 20.8% |
| 3709058 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 46.0 | 3.43e-01 | 100.0% | 44.5% |
| 2732105 | 719.1.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 | 0.56 | 43.0 | 4.47e-01 | 88.2% | 95.8% |
| 3960103 | 222.1.1.15 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C | 0.56 | 41.0 | 3.04e-01 | 82.4% | 69.0% |
| 3886120 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.55 | 38.0 | 3.29e-01 | 74.5% | 57.6% |
| 3552202 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.55 | 42.0 | 2.69e-01 | 88.2% | 44.1% |
| 3842847 | 9.13.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like | 0.55 | 44.0 | 3.65e-01 | 100.0% | 47.6% |
| 3300051 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.54 | 43.0 | 3.91e-01 | 98.0% | 64.0% |
| 3660244 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.54 | 43.0 | 3.91e-01 | 96.1% | 65.3% |
| 3786346 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 44.0 | 3.09e-01 | 96.1% | 56.6% |