Back to structures

IMGVR_UViG_3300025706_000537-3300025706-Ga0209507_10079502

Arc-Vir

IMGVR_UViG_3300025706_000537-3300025706-Ga0209507_10079502

Quality

75.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-77
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jg5A00 3.30.1410.10 Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP 0.65 48.0 4.73e-01 80.3% 91.6%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.63 54.0 4.51e-01 96.1% 77.6%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.61 43.0 3.81e-01 72.4% 53.7%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 52.0 4.37e-01 98.7% 71.4%
4oloB00 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.57 39.0 3.85e-01 72.4% 85.7%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.56 40.0 3.54e-01 100.0% 50.9%
6me6B02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 38.0 2.67e-01 75.0% 53.9%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 37.0 3.25e-01 73.7% 78.0%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 3.45e-01 73.7% 77.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3283649 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.69 59.0 5.68e-01 93.4% 94.1%
3443416 242.2.1.2 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.67 55.0 4.95e-01 89.5% 76.0%
4981692 241.11.1.6 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › TfoX_N 0.65 46.0 4.18e-01 75.0% 57.1%
3196130 242.2.1.2 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.65 55.0 5.04e-01 93.4% 91.0%
4021656 242.2.1.0 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.65 54.0 5.15e-01 92.1% 88.6%
2791256 306.5.1.1 a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP › GFRP 0.64 48.0 4.61e-01 80.3% 87.4%
4978354 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 54.0 4.84e-01 97.4% 73.6%
4479273 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.63 53.0 4.55e-01 97.4% 77.7%
4559752 242.1.1.6 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA 0.63 51.0 4.83e-01 89.5% 84.4%
3206671 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.62 52.0 4.45e-01 97.4% 76.9%
152524 242.2.1.0 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.60 52.0 4.76e-01 98.7% 76.7%
4928284 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.60 53.0 4.18e-01 100.0% 96.9%
4001744 327.11.2.14 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_9 0.59 35.0 3.28e-01 100.0% 47.4%
4965319 241.11.1.3 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › Luciferase 0.59 41.0 3.50e-01 75.0% 45.9%
5059446 241.7.1.1 a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.57 40.0 3.72e-01 73.7% 61.0%
5059231 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.57 42.0 4.14e-01 77.6% 93.8%
5064885 2004.1.1.120 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.56 48.0 3.49e-01 100.0% 76.6%
4566255 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.56 39.0 3.65e-01 75.0% 68.0%
4968968 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.55 39.0 3.93e-01 77.6% 93.8%
4981017 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.54 39.0 3.92e-01 77.6% 93.8%
4968640 242.4.1.0 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain 0.53 43.0 3.94e-01 94.7% 74.5%
4928059 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 44.0 3.72e-01 96.1% 73.1%
3290673 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.50 37.0 3.16e-01 81.6% 54.1%
D2 high residues 80-118_416-602
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00176.30 best SNF2-rel_dom 72.0 6.40e-20 82.3% 66.3%
PF04851.22 ResIII 26.1 1.00e-05 51.8% 70.7%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fwrA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.86 60.0 6.83e-01 96.0% 89.9%
1z6aA01 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.81 71.0 7.47e-01 92.5% 98.5%
8oosG01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.80 72.0 7.52e-01 96.0% 100.0%
1z3iX01 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.78 74.0 6.83e-01 98.2% 99.6%
1wp9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.78 62.0 6.63e-01 96.0% 92.5%
3mwyW03 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.78 73.0 6.80e-01 98.2% 81.7%
1rifA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.77 62.0 6.73e-01 97.8% 96.9%
2z0mA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 61.0 6.61e-01 97.3% 98.4%
3dmqA04 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.73 67.0 5.97e-01 95.6% 89.1%
3rc3A03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 46.0 5.46e-01 86.7% 90.6%
6vsxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 44.0 5.26e-01 87.2% 88.1%
5supC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 62.0 6.45e-01 98.7% 96.2%
7r7jA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 54.0 5.96e-01 92.0% 95.2%
1vecA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 62.0 6.48e-01 99.1% 99.5%
2gk6A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 55.0 5.19e-01 97.3% 68.7%
3dmnA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 43.0 5.03e-01 86.7% 85.7%
6jdrA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 40.0 4.95e-01 86.7% 90.9%
3sxuA00 3.40.50.10110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › DNA polymerase III subunit chi 0.68 43.0 5.30e-01 86.3% 97.9%
2xgjB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 56.0 5.91e-01 100.0% 96.6%
3llmA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 55.0 5.52e-01 96.0% 86.2%
2o0jA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 54.0 5.16e-01 97.3% 76.8%
3huuC02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 37.0 4.68e-01 90.7% 94.7%
1jqlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 38.0 4.75e-01 100.0% 95.7%
1iqpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 41.0 4.67e-01 96.0% 86.3%
2xauA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 55.0 5.46e-01 97.8% 89.2%
1jbkA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 43.0 4.74e-01 96.0% 84.7%
3mggB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 42.0 4.76e-01 92.5% 95.7%
1e5dA01 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.59 32.0 3.97e-01 76.1% 81.8%
2q9uA02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.59 33.0 4.00e-01 76.1% 82.8%
3u4qB03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 47.0 4.83e-01 87.2% 85.3%
3kloA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 36.0 4.42e-01 76.1% 94.4%
1yksA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 45.0 5.00e-01 79.6% 98.9%
3jy6D02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 35.0 4.36e-01 91.2% 97.0%
3hl0A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 37.0 4.29e-01 86.7% 88.7%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 32.0 4.10e-01 88.1% 93.0%
1szpB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 4.73e-01 94.2% 89.6%
3a7eA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 45.0 4.65e-01 96.5% 88.7%
7xrjA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 30.0 4.00e-01 76.1% 100.0%
3qhqB01 3.40.50.11940 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 35.0 4.22e-01 89.4% 96.6%
3ftdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 40.0 4.42e-01 95.1% 96.6%
4hi0E00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 40.0 4.26e-01 86.3% 87.8%
1ej0A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 40.0 4.43e-01 93.8% 96.7%
6ptzA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 29.0 3.62e-01 93.4% 87.7%
4u63A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 30.0 3.33e-01 86.3% 69.0%
3olqA00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 38.0 3.49e-01 75.2% 92.2%
2i6gB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 42.0 4.49e-01 96.9% 97.0%
4rz2B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 4.08e-01 86.3% 78.5%
3l8dA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 4.45e-01 95.1% 98.0%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3508225 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.92 67.0 7.26e-01 73.9% 100.0%
3541131 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.90 87.0 6.31e-01 98.7% 44.3%
3773590 2004.1.1.952 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, Flavi_DEAD 0.90 88.0 6.34e-01 100.0% 44.8%
3229856 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.89 85.0 7.78e-01 98.2% 80.7%
3795974 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.88 85.0 6.17e-01 98.2% 45.3%
3252815 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.88 83.0 7.63e-01 98.2% 79.3%
3595425 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.88 81.0 7.87e-01 97.8% 87.8%
3708082 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.87 82.0 7.69e-01 97.8% 82.3%
3629834 2004.1.1.629 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, ResIII 0.87 83.0 6.20e-01 99.6% 45.3%
3918553 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.87 85.0 7.57e-01 100.0% 77.3%
4032731 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.87 80.0 7.96e-01 94.7% 97.8%
3812029 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.87 83.0 6.07e-01 98.2% 45.8%
4027472 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.86 82.0 7.61e-01 98.2% 81.8%
3658092 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.86 82.0 7.73e-01 98.2% 90.8%
3988710 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.85 77.0 7.40e-01 100.0% 84.4%
4995767 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.83 80.0 7.49e-01 100.0% 92.2%
3283670 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.83 75.0 7.36e-01 98.7% 87.9%
3968942 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.83 79.0 7.01e-01 98.7% 73.1%
5039175 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.82 80.0 7.74e-01 100.0% 92.7%
5072656 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.82 77.0 7.56e-01 96.5% 92.5%
3169685 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.82 80.0 5.29e-01 100.0% 50.5%
3891289 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.82 79.0 7.42e-01 98.2% 89.6%
3411076 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.82 80.0 4.57e-01 100.0% 14.0%
5020193 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.82 80.0 6.92e-01 100.0% 78.8%
3553766 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.82 80.0 6.83e-01 100.0% 94.5%
4379605 2004.1.1.468 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, DBINO 0.82 80.0 7.12e-01 100.0% 84.1%
3595199 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 78.0 6.82e-01 98.2% 72.7%
3611439 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.82 78.0 6.51e-01 98.2% 64.5%
4001710 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.82 80.0 5.39e-01 100.0% 35.2%
3499166 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 78.0 5.44e-01 98.2% 44.7%
3367832 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 80.0 5.30e-01 100.0% 40.4%
3494828 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.82 78.0 5.51e-01 97.3% 45.4%
3717482 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.82 78.0 5.43e-01 98.2% 39.0%
3649222 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.82 78.0 6.49e-01 98.2% 68.5%
3596131 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 78.0 7.28e-01 97.8% 91.3%
3875625 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 79.0 4.74e-01 100.0% 19.7%
3668729 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.82 79.0 7.09e-01 100.0% 86.8%
3565080 109.4.1.2067 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNF2-rel_dom, Helicase_C 0.82 79.0 4.72e-01 100.0% 19.4%
None 0.82 79.0 4.53e-01 100.0% 14.3%
3747775 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.82 79.0 4.52e-01 100.0% 14.1%
3175395 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.81 78.0 6.50e-01 98.2% 70.3%
3279168 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.81 79.0 6.62e-01 100.0% 98.0%
3627919 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 77.0 5.11e-01 97.8% 32.9%
None 0.81 76.0 5.14e-01 98.2% 30.4%
3391852 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.81 78.0 6.93e-01 98.7% 81.0%
5058709 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 79.0 7.16e-01 100.0% 79.6%
3677434 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.81 79.0 4.52e-01 100.0% 14.6%
3473285 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.81 78.0 5.42e-01 98.7% 39.2%
3715586 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.81 77.0 5.54e-01 97.3% 43.3%
3614572 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.81 77.0 5.28e-01 97.8% 36.4%
4631194 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.81 78.0 5.36e-01 98.7% 45.8%
3904542 2004.1.1.528 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, DUF1087, HDA2-3 0.81 78.0 5.35e-01 98.7% 37.4%
None 0.81 77.0 6.94e-01 98.2% 90.5%
4017599 109.4.1.2623 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNF2-rel_dom 0.81 78.0 5.01e-01 100.0% 27.5%
3697952 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.81 78.0 4.50e-01 100.0% 14.2%
3686390 2004.1.1.602 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3, SnAC 0.81 77.0 5.23e-01 98.2% 34.4%
4003022 2004.1.1.428 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 0.81 77.0 5.51e-01 98.2% 44.4%
3882016 2004.1.1.698 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, ResIII, HDA2-3 0.81 78.0 5.27e-01 100.0% 36.9%
4153562 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.81 77.0 7.45e-01 100.0% 89.2%
3275731 109.4.1.2067 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNF2-rel_dom, Helicase_C 0.81 78.0 4.71e-01 100.0% 20.0%
4028089 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.81 77.0 6.96e-01 98.2% 89.0%
3206515 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.81 78.0 6.92e-01 100.0% 88.2%
None 0.81 78.0 4.51e-01 100.0% 14.7%
3789283 2004.1.1.428 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 0.81 76.0 5.30e-01 98.2% 35.0%
3699145 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.81 77.0 7.20e-01 97.8% 90.2%
3595918 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 76.0 6.36e-01 97.3% 97.5%
4398583 2004.1.1.428 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 0.81 77.0 5.28e-01 98.2% 41.8%
4023184 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 78.0 5.59e-01 99.6% 43.8%
3308007 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.81 77.0 5.23e-01 98.2% 33.0%
3597289 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 76.0 5.38e-01 98.2% 37.4%
3188539 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.81 78.0 5.33e-01 100.0% 38.7%
3735883 2004.1.1.25 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C,SnAC 0.81 76.0 5.23e-01 98.2% 34.0%
4048100 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.81 78.0 6.50e-01 99.6% 75.4%
3862952 2004.1.1.428 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 0.81 76.0 5.34e-01 97.8% 42.9%
3642135 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.80 77.0 7.18e-01 98.7% 95.6%
3429073 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.80 76.0 5.69e-01 97.3% 47.2%
4425769 2004.1.1.656 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, VIGSSK 0.80 76.0 5.21e-01 97.8% 39.1%
3870948 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 76.0 5.03e-01 98.2% 30.0%
3918802 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.80 77.0 5.33e-01 98.7% 41.9%
3921813 2004.1.1.873 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, ResIII, HDA2-3, SnAC 0.80 76.0 5.14e-01 98.2% 33.1%
4022962 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 76.0 5.35e-01 98.2% 39.8%
3214040 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.80 77.0 7.04e-01 100.0% 79.6%
3767759 2004.1.1.698 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, ResIII, HDA2-3 0.80 76.0 5.35e-01 98.2% 38.9%
3769891 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.80 76.0 6.76e-01 98.2% 86.6%
3494867 2004.1.1.428 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 0.80 75.0 5.33e-01 98.2% 38.1%
3237364 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.80 76.0 5.23e-01 98.7% 41.3%
3833866 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.80 76.0 5.02e-01 98.2% 28.3%
3190566 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.80 76.0 7.09e-01 98.7% 90.4%
3202180 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.80 76.0 6.40e-01 98.7% 75.1%
4021009 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 77.0 6.69e-01 100.0% 82.5%
3734181 2004.1.1.428 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 0.80 76.0 5.25e-01 98.2% 35.9%
3744832 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.80 77.0 5.18e-01 100.0% 34.5%
3788293 2004.1.1.468 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, DBINO 0.79 75.0 6.53e-01 98.7% 69.1%
3719343 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.79 76.0 5.33e-01 99.6% 50.0%
3473985 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.79 76.0 7.34e-01 100.0% 92.8%
3593368 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.79 76.0 6.82e-01 98.7% 77.6%
3615886 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.79 75.0 7.13e-01 98.2% 91.8%
4000675 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.78 69.0 7.24e-01 93.4% 99.5%
3561811 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.77 75.0 5.82e-01 100.0% 52.6%
5004051 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.73 67.0 6.02e-01 95.1% 96.0%
D3 high residues 294-359
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 51.6 7.80e-14 71.2% 97.8%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.74 52.0 4.83e-01 74.2% 78.3%
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.72 64.0 5.42e-01 100.0% 60.4%
5xfaA03 3.10.20.600 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 38.0 3.57e-01 71.2% 74.1%
3tw6B03 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 40.0 2.46e-01 83.3% 44.4%
3nkuA00 1.10.357.170 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.53 37.0 2.81e-01 74.2% 65.3%
2czrA02 3.90.79.30 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain 0.52 36.0 3.04e-01 74.2% 98.3%
2z7bA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.51 40.0 2.86e-01 92.4% 78.9%
1k8rB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 35.0 3.33e-01 74.2% 62.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266965 378.1.2.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 0.92 73.0 7.43e-01 95.5% 84.6%
3965202 378.1.1.19 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.87 66.0 5.43e-01 100.0% 47.3%
3539740 378.1.1.19 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.83 65.0 5.14e-01 98.5% 43.2%
5053631 378.1.1.19 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.83 76.0 6.35e-01 100.0% 79.1%
4303143 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.80 57.0 5.22e-01 74.2% 61.2%
3586841 378.1.1.7 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.80 67.0 5.46e-01 100.0% 51.3%
4949181 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.75 56.0 5.32e-01 77.3% 78.7%
4313114 378.1.1.30 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF30178 0.74 53.0 4.34e-01 75.8% 49.2%
3695527 378.1.1.6 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.65 57.0 4.73e-01 100.0% 60.0%
4418037 2498.1.1.22 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.58 40.0 3.08e-01 71.2% 65.8%
3713445 2008.1.1.77 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.56 40.0 3.27e-01 77.3% 97.8%
3720200 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 40.0 3.54e-01 77.3% 71.0%
3614398 319.1.1.8 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CactinC_cactus 0.54 37.0 3.12e-01 74.2% 78.4%
D4 high residues 616-841
PDB
D5 medium residues 121-197_391-415
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.76 71.0 5.74e-01 98.0% 100.0%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.76 71.0 5.81e-01 98.0% 100.0%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.76 71.0 5.79e-01 98.0% 100.0%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.73 67.0 5.56e-01 98.0% 100.0%
2lcjA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.72 66.0 5.29e-01 98.0% 100.0%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.71 65.0 5.70e-01 96.1% 100.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 34.0 4.06e-01 79.4% 87.1%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 33.0 4.11e-01 75.5% 89.8%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.59 39.0 4.08e-01 100.0% 75.8%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.55 32.0 3.42e-01 93.1% 65.1%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 29.0 3.56e-01 75.5% 91.9%
2v4dE01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.50 34.0 3.66e-01 96.1% 83.3%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 30.0 3.40e-01 92.2% 83.1%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 36.0 3.81e-01 93.1% 83.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037092 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 50.0 5.87e-01 96.1% 92.9%
4997604 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 73.0 5.97e-01 100.0% 97.6%
4943244 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 70.0 5.77e-01 97.1% 99.4%
5066389 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.76 72.0 5.71e-01 100.0% 98.9%
5029854 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.76 72.0 5.52e-01 100.0% 97.6%
4971412 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.75 67.0 5.44e-01 95.1% 100.0%
4054994 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.74 70.0 5.77e-01 100.0% 97.1%
4170121 69.1.1.11 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT, Intein_splicing 0.74 69.0 5.70e-01 99.0% 99.4%
4594307 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.73 69.0 5.68e-01 100.0% 100.0%
5013038 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.73 66.0 5.59e-01 97.1% 97.5%
3604439 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.72 67.0 5.58e-01 100.0% 98.8%
182766 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.72 66.0 5.29e-01 98.0% 100.0%
4975971 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.71 65.0 5.91e-01 96.1% 100.0%
5012957 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.71 67.0 5.45e-01 100.0% 99.4%
3282306 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.71 66.0 5.87e-01 97.1% 99.3%
3941539 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.60 35.0 3.53e-01 85.3% 55.2%
4932851 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.59 56.0 5.01e-01 100.0% 97.8%
3511564 1.1.7.80 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.57 34.0 3.46e-01 94.1% 58.0%
167841 4.26.1.1 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.57 32.0 3.91e-01 80.4% 91.7%
3971760 1.1.7.80 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.57 33.0 3.61e-01 94.1% 70.0%
3946167 1.1.7.80 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.56 33.0 3.39e-01 94.1% 60.0%
3829096 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 39.0 2.53e-01 73.5% 35.6%
3488114 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 32.0 3.05e-01 91.2% 49.2%
3580086 389.1.1.100 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › cEGF, EGF_3 0.52 24.0 3.24e-01 87.3% 86.0%
3781383 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 31.0 3.33e-01 80.4% 66.7%
648 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.52 36.0 3.84e-01 91.2% 84.1%
3971861 1.1.7.80 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.51 35.0 3.50e-01 96.1% 69.9%
3395185 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.51 43.0 3.44e-01 94.1% 88.4%
D6 medium residues 198-272_372-390
PDB
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mi8A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.95 59.0 5.02e-01 100.0% 42.6%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.90 53.0 4.51e-01 100.0% 39.7%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.87 61.0 5.14e-01 100.0% 47.2%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.85 53.0 4.56e-01 100.0% 43.5%
2jmzA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.84 56.0 4.50e-01 100.0% 38.1%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.83 58.0 4.61e-01 100.0% 39.6%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.82 60.0 4.72e-01 100.0% 40.1%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.80 59.0 4.70e-01 100.0% 42.0%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.79 55.0 4.67e-01 100.0% 46.9%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.77 58.0 4.58e-01 100.0% 42.1%
2lcjA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.66 55.0 4.38e-01 100.0% 45.9%
1am2A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.60 58.0 4.48e-01 100.0% 55.2%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 35.0 4.04e-01 96.8% 87.5%
8begA03 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 3.65e-01 77.7% 83.2%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 32.0 3.78e-01 94.7% 100.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994372 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.97 57.0 5.11e-01 100.0% 46.7%
3282306 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.97 58.0 5.02e-01 100.0% 43.0%
3952464 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.96 59.0 4.91e-01 100.0% 40.7%
4457379 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.94 57.0 4.79e-01 100.0% 40.0%
4291841 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.94 56.0 4.47e-01 100.0% 34.5%
2445477 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.93 60.0 4.90e-01 100.0% 40.3%
2553113 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.92 56.0 4.93e-01 100.0% 45.3%
5014852 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 50.0 4.22e-01 100.0% 36.6%
4997601 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 58.0 4.90e-01 100.0% 44.3%
4152516 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 55.0 4.76e-01 100.0% 44.4%
4932851 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.88 56.0 4.86e-01 100.0% 45.2%
3603738 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 59.0 5.03e-01 100.0% 46.4%
4930925 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 57.0 4.87e-01 100.0% 45.0%
2701967 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 56.0 4.87e-01 100.0% 45.3%
4971400 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 58.0 3.90e-01 100.0% 21.7%
4993853 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 60.0 4.80e-01 100.0% 40.6%
4993871 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 58.0 5.36e-01 96.8% 56.5%
4997597 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 56.0 4.68e-01 100.0% 42.0%
5002632 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 57.0 4.74e-01 100.0% 43.6%
4940699 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 59.0 4.85e-01 100.0% 43.9%
3603108 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 56.0 4.71e-01 100.0% 44.1%
4993808 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 55.0 4.66e-01 100.0% 44.1%
5030847 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 56.0 4.59e-01 100.0% 41.2%
4127166 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 64.0 5.34e-01 100.0% 50.7%
4416649 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 62.0 5.19e-01 100.0% 50.3%
4993813 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 55.0 4.48e-01 100.0% 40.6%
4565870 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 59.0 4.84e-01 100.0% 45.2%
4933756 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.81 58.0 4.93e-01 100.0% 49.3%
4667152 69.1.1.3 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.81 60.0 4.90e-01 100.0% 45.6%
3257888 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.81 58.0 4.78e-01 100.0% 46.0%
5013937 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.81 59.0 4.73e-01 100.0% 43.0%
4070999 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.80 56.0 4.64e-01 100.0% 43.9%
5052154 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 56.0 4.48e-01 100.0% 41.2%
4945569 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 58.0 4.76e-01 100.0% 46.5%
5065032 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 59.0 4.79e-01 100.0% 44.8%
4940943 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 58.0 4.57e-01 100.0% 42.4%
5032319 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 57.0 4.77e-01 100.0% 48.0%
5029355 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.77 55.0 4.60e-01 100.0% 46.0%
4586920 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 57.0 4.70e-01 100.0% 47.1%
5030499 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.75 56.0 4.68e-01 100.0% 48.7%
5037092 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 45.0 5.18e-01 91.5% 81.4%
3215378 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.74 40.0 3.36e-01 85.1% 33.3%
4948019 69.1.1.17 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › MCM 0.73 57.0 4.54e-01 100.0% 44.0%
4998394 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.71 59.0 4.90e-01 100.0% 52.9%
3230518 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.71 55.0 4.54e-01 100.0% 49.0%
4662849 377.1.1.2 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S14 0.69 31.0 4.23e-01 75.5% 83.3%
5035476 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.68 59.0 4.78e-01 100.0% 52.5%
2323756 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.65 54.0 4.48e-01 100.0% 51.9%
4998392 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.64 57.0 4.57e-01 100.0% 53.3%
4315406 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.63 60.0 4.70e-01 100.0% 55.0%
4404140 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.63 46.0 3.72e-01 100.0% 41.1%
5012699 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.62 59.0 4.71e-01 100.0% 57.6%
4946209 69.1.1.18 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › DNA_topoisoIV 0.62 59.0 4.41e-01 100.0% 67.3%
4992473 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.61 42.0 3.41e-01 95.7% 38.8%
5014854 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.59 56.0 4.17e-01 100.0% 52.1%
4979631 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.57 40.0 3.44e-01 86.2% 46.0%