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IMGVR_UViG_3300025707_000259-3300025707-Ga0209667_100475710

Arc-Vir

IMGVR_UViG_3300025707_000259-3300025707-Ga0209667_100475710

Quality

72.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-65
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ldgA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.68 58.0 3.93e-01 100.0% 78.4%
3cjsA00 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.67 49.0 4.74e-01 83.7% 69.0%
2gjhA00 3.30.1070.20 Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › 0.65 48.0 4.67e-01 81.6% 82.5%
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.65 50.0 4.40e-01 85.7% 62.7%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.65 51.0 4.54e-01 89.8% 62.5%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.64 53.0 3.76e-01 100.0% 90.1%
5cemA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 55.0 4.87e-01 100.0% 95.9%
3ipjA01 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.63 45.0 4.00e-01 100.0% 50.0%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.63 48.0 4.35e-01 91.8% 60.3%
1r89A04 3.30.70.1550 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Archaeal tRNA CCA-adding enzyme catalytic domain 0.62 45.0 4.69e-01 85.7% 90.9%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 45.0 4.13e-01 81.6% 59.1%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.60 48.0 3.76e-01 100.0% 72.5%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 3.74e-01 81.6% 56.7%
3qyfA03 1.10.10.1690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 0.59 43.0 4.04e-01 77.6% 62.3%
1af5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 50.0 3.79e-01 100.0% 44.4%
1ufwA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 49.0 4.08e-01 100.0% 56.8%
3grzB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 50.0 3.37e-01 98.0% 74.1%
3cr8A01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.58 47.0 3.51e-01 98.0% 51.1%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.57 45.0 4.08e-01 100.0% 63.3%
2gqcA01 3.30.70.2080 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 4.19e-01 87.8% 76.8%
4ab7H02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 50.0 3.52e-01 100.0% 44.7%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 48.0 3.54e-01 100.0% 38.6%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 46.0 3.32e-01 100.0% 51.7%
1jkzA00 3.30.30.10 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like 0.56 41.0 4.19e-01 87.8% 97.8%
5gt8D02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.56 46.0 3.60e-01 100.0% 88.5%
6vudA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 41.0 3.75e-01 100.0% 57.3%
4k30A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 49.0 3.42e-01 100.0% 48.4%
3cu7A12 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.55 41.0 3.11e-01 85.7% 33.3%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 3.69e-01 83.7% 60.0%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 3.70e-01 89.8% 64.2%
4ynmB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.55 47.0 3.17e-01 100.0% 62.8%
1kjwA03 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.55 39.0 3.70e-01 77.6% 82.0%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.17e-01 73.5% 60.2%
2zzzA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.54 38.0 3.66e-01 77.6% 81.7%
3s6gA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 48.0 3.41e-01 100.0% 48.6%
2w5yA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.54 45.0 3.25e-01 100.0% 53.5%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 40.0 3.53e-01 81.6% 61.3%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.54 40.0 2.74e-01 89.8% 90.1%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.52 38.0 3.56e-01 85.7% 68.6%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.52 42.0 3.78e-01 100.0% 63.6%
4krgA02 3.40.50.12180 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 41.0 2.89e-01 100.0% 88.3%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.52 37.0 3.47e-01 93.9% 59.4%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.52 40.0 3.48e-01 100.0% 52.1%
1xxaC00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.51 37.0 3.38e-01 81.6% 58.9%
3k0bA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 44.0 3.08e-01 100.0% 86.5%
4iscA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 41.0 3.04e-01 100.0% 92.3%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 39.0 3.00e-01 100.0% 63.7%
1dcoA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.50 39.0 3.36e-01 100.0% 52.5%
3b43A06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.05e-01 81.6% 48.4%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3192546 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.69 59.0 5.07e-01 98.0% 60.3%
4101997 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.69 53.0 4.76e-01 100.0% 58.6%
4215184 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.68 53.0 4.73e-01 85.7% 60.0%
1179696 304.138.1.0 a+b two layers › Alpha-beta plaits 0.67 50.0 4.56e-01 83.7% 59.7%
3972855 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.67 54.0 4.69e-01 89.8% 58.7%
4946346 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.66 57.0 4.46e-01 100.0% 44.5%
4070496 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.65 52.0 4.60e-01 95.9% 57.3%
4206076 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.65 49.0 4.56e-01 100.0% 63.1%
4093818 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.65 52.0 4.55e-01 89.8% 58.7%
4622891 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.64 51.0 4.50e-01 89.8% 58.7%
4943447 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.64 48.0 4.13e-01 79.6% 52.0%
4653000 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.64 48.0 4.39e-01 85.7% 60.0%
4156338 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.64 50.0 4.52e-01 95.9% 61.3%
3955112 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.64 47.0 3.93e-01 81.6% 44.4%
157953 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.64 51.0 4.42e-01 91.8% 58.2%
3648146 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.63 48.0 4.96e-01 87.8% 100.0%
4948057 328.4.1.0 a+b two layers › IF3-like › YhbY-like › YhbY-like 0.62 48.0 4.01e-01 89.8% 89.5%
4955127 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.62 47.0 4.32e-01 87.8% 62.9%
5017624 4271.1.1.0 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like 0.62 46.0 3.00e-01 79.6% 20.0%
4080161 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.62 46.0 4.12e-01 85.7% 62.7%
4279811 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.61 46.0 4.07e-01 85.7% 52.5%
3624413 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.61 45.0 4.16e-01 81.6% 67.7%
4936768 304.20.1.4 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.61 50.0 3.49e-01 95.9% 39.4%
4661896 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.61 45.0 4.21e-01 85.7% 63.1%
4986894 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.60 44.0 4.18e-01 79.6% 65.0%
5053540 2003.1.5.67 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.60 49.0 3.31e-01 100.0% 87.5%
4222799 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.59 50.0 3.64e-01 100.0% 36.1%
4886196 4988.1.1.1 a+b two layers › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal_S8 0.59 43.0 4.20e-01 81.6% 70.9%
5040248 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.59 43.0 3.94e-01 85.7% 61.3%
1388654 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.59 50.0 3.56e-01 100.0% 35.4%
3994473 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.59 47.0 3.60e-01 91.8% 40.0%
3939270 207.1.1.156 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.59 42.0 2.79e-01 79.6% 19.6%
4027905 320.2.1.0 a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain 0.58 42.0 4.12e-01 81.6% 70.9%
3840730 320.1.1.7 a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.58 44.0 3.92e-01 89.8% 56.2%
4856819 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 44.0 3.02e-01 89.8% 30.0%
3890741 320.1.1.7 a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.58 43.0 3.88e-01 89.8% 56.2%
5057038 304.20.1.4 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.57 43.0 3.13e-01 91.8% 38.3%
3879225 213.1.1.11 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NAT 0.57 51.0 3.58e-01 100.0% 47.3%
4033416 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.57 43.0 3.95e-01 89.8% 61.4%
4310337 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.57 41.0 3.81e-01 83.7% 58.6%
3720741 213.1.1.11 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NAT 0.56 50.0 3.41e-01 100.0% 37.8%
3798285 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 45.0 3.99e-01 100.0% 60.0%
3863498 11.1.5.27 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep 0.56 41.0 3.19e-01 85.7% 33.8%
4977937 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 42.0 3.83e-01 85.7% 60.0%
3649616 2003.1.5.115 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 0.55 45.0 2.89e-01 98.0% 56.3%
3947466 304.48.1.48 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 0.55 45.0 3.26e-01 98.0% 51.8%
3604109 304.20.1.4 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.54 40.0 3.04e-01 91.8% 37.8%
3394861 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.54 40.0 2.84e-01 100.0% 22.6%
3976720 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.54 41.0 3.78e-01 87.8% 61.4%
3644629 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.54 43.0 3.31e-01 100.0% 93.6%
3743917 70.3.1.8 beta barrels › beta-clip › SET domain-like › SET domain-like › SET+N-SET 0.54 45.0 3.01e-01 100.0% 36.4%
4518870 320.2.1.1 a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.54 39.0 3.70e-01 83.7% 63.1%
5055391 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.53 37.0 2.40e-01 75.5% 43.2%
2475411 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.53 39.0 3.67e-01 91.8% 68.5%
3611405 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.53 37.0 3.54e-01 81.6% 67.7%
3869516 327.11.2.56 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF28453 0.52 38.0 3.61e-01 83.7% 72.3%
3699998 4340.1.1.0 a+b complex topology › TFB5-related › TFB5-related › TFB5-related 0.51 38.0 3.71e-01 89.8% 76.7%
4321513 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.51 37.0 3.01e-01 85.7% 37.3%
4946311 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.50 37.0 3.46e-01 100.0% 60.0%
4178993 304.28.1.27 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Med13_N 0.50 37.0 3.16e-01 89.8% 47.0%