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IMGVR_UViG_3300025707_000485-3300025707-Ga0209667_10067976
Arc-VirIMGVR_UViG_3300025707_000485-3300025707-Ga0209667_10067976
Identity
- Kingdom:
- archaea
Quality
91.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-34
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hryA01 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.86 | 65.0 | 5.74e-01 | 82.4% | 57.1% |
| 1gcbA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.76 | 58.0 | 3.26e-01 | 85.3% | 9.3% |
| 3qx3B03 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.70 | 55.0 | 4.06e-01 | 94.1% | 35.0% |
| 1mkeA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 50.0 | 3.44e-01 | 91.2% | 65.3% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.64 | 47.0 | 4.00e-01 | 91.2% | 49.3% |
| 1cp9A01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.63 | 49.0 | 3.26e-01 | 91.2% | 61.6% |
| 4zyaB00 | 3.30.1910.20 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain | 0.61 | 43.0 | 3.38e-01 | 76.5% | 86.8% |
| 1l5xA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.61 | 49.0 | 2.98e-01 | 100.0% | 66.5% |
| 2gs8A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.61 | 45.0 | 3.16e-01 | 88.2% | 21.4% |
| 2c4kA01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 46.0 | 3.11e-01 | 100.0% | 60.5% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.59 | 42.0 | 3.45e-01 | 94.1% | 40.2% |
| 1yyvB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 3.29e-01 | 100.0% | 79.5% |
| 3t91B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.56 | 41.0 | 2.62e-01 | 85.3% | 14.6% |
| 6qdws00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.56 | 38.0 | 2.60e-01 | 97.1% | 22.0% |
| 1ab8A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.55 | 42.0 | 2.77e-01 | 97.1% | 93.8% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.55 | 40.0 | 2.83e-01 | 97.1% | 57.4% |
| 2mkyA00 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.54 | 40.0 | 3.66e-01 | 94.1% | 60.3% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.54 | 43.0 | 2.65e-01 | 94.1% | 13.7% |
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 43.0 | 3.10e-01 | 94.1% | 31.5% |
| 2fyuI00 | 2.10.210.10 | Mainly Beta › Ribbon › Cytochrome Bc1 Complex; Chain I › Cytochrome Bc1 Complex; Chain I | 0.54 | 39.0 | 3.53e-01 | 88.2% | 54.4% |
| 1xhbA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 40.0 | 2.53e-01 | 94.1% | 33.9% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.52 | 38.0 | 2.86e-01 | 79.4% | 40.0% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 40.0 | 3.31e-01 | 85.3% | 55.9% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.52 | 36.0 | 2.52e-01 | 100.0% | 45.4% |
| 3shqA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.51 | 41.0 | 2.59e-01 | 94.1% | 48.4% |
| 3wisA00 | 3.40.50.1950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like | 0.51 | 42.0 | 2.67e-01 | 100.0% | 51.7% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.50 | 36.0 | 3.10e-01 | 88.2% | 69.4% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4889887 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.63 | 43.0 | 2.93e-01 | 79.4% | 17.1% |
| 3998381 | 2004.1.1.432 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 | 0.63 | 44.0 | 2.64e-01 | 76.5% | 11.0% |
| 3308597 | 304.9.1.47 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283 | 0.62 | 44.0 | 3.92e-01 | 88.2% | 49.2% |
| 4025059 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.62 | 47.0 | 3.11e-01 | 91.2% | 57.1% |
| 3294223 | 304.9.1.47 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283 | 0.61 | 45.0 | 3.80e-01 | 88.2% | 44.3% |
| 3295499 | 263.1.1.6 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › PF27048 | 0.60 | 42.0 | 3.64e-01 | 76.5% | 41.8% |
| 3959836 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.60 | 45.0 | 4.04e-01 | 97.1% | 58.3% |
| 3644183 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 44.0 | 3.77e-01 | 91.2% | 50.0% |
| 3268136 | 7563.1.1.0 ↗ | a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related | 0.58 | 44.0 | 2.91e-01 | 100.0% | 21.5% |
| 3502564 | 312.1.1.6 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 | 0.58 | 43.0 | 2.85e-01 | 79.4% | 71.2% |
| 3998938 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.57 | 40.0 | 2.21e-01 | 76.5% | 25.7% |
| 3816946 | 3462.1.1.47 ↗ | extended segments › V-type proton ATPase subunit G › V-type proton ATPase subunit G › V-type proton ATPase subunit G › PF27048 | 0.56 | 40.0 | 3.13e-01 | 73.5% | 28.7% |
| 3369362 | 3922.1.1.161 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › EIN3_N | 0.56 | 40.0 | 3.49e-01 | 76.5% | 40.0% |
| 3803995 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.56 | 39.0 | 3.04e-01 | 76.5% | 58.7% |
| 4940197 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 2.87e-01 | 88.2% | 29.2% |
| 5007658 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.53 | 40.0 | 2.75e-01 | 85.3% | 77.8% |
| 4126668 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.53 | 42.0 | 3.14e-01 | 94.1% | 32.4% |
| 3286928 | 245.2.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB | 0.53 | 38.0 | 3.50e-01 | 88.2% | 52.7% |
| 3627409 | 6166.1.1.1 ↗ | alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 | 0.53 | 41.0 | 2.65e-01 | 94.1% | 43.5% |
| 4880604 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.52 | 37.0 | 2.65e-01 | 94.1% | 21.1% |
| 4947615 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.52 | 41.0 | 3.55e-01 | 94.1% | 69.2% |
| 3924545 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.52 | 39.0 | 2.91e-01 | 100.0% | 77.5% |
| 3099713 | 101.1.2.18 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e | 0.52 | 42.0 | 2.80e-01 | 97.1% | 48.1% |
| 4028147 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.51 | 37.0 | 2.98e-01 | 76.5% | 58.6% |
| 4310019 | 3249.1.1.2 ↗ | beta sandwiches › beta-sandwich domain in YqeH GTPase › beta-sandwich domain in YqeH GTPase › beta-sandwich domain in YqeH GTPase › PF31140 | 0.51 | 37.0 | 2.73e-01 | 97.1% | 96.3% |
| 1871052 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.50 | 35.0 | 2.41e-01 | 88.2% | 36.7% |
| 3328211 | 263.1.1.6 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › PF27048 | 0.50 | 38.0 | 3.10e-01 | 85.3% | 35.0% |
| 3305599 | 304.55.1.20 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N, REP_ORF2-G2P | 0.50 | 37.0 | 2.96e-01 | 94.1% | 45.6% |