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IMGVR_UViG_3300025715_000776-3300025715-Ga0209310_10090991
Arc-VirIMGVR_UViG_3300025715_000776-3300025715-Ga0209310_10090991
Identity
- Kingdom:
- archaea
Quality
86.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 306-379
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m6nA05 | 1.10.1200.230 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.59 | 45.0 | 4.35e-01 | 82.4% | 77.6% |
| 7cluA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 51.0 | 4.86e-01 | 100.0% | 94.4% |
| 2ra1A01 | 1.20.58.790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 40.0 | 3.69e-01 | 86.5% | 55.1% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.56 | 49.0 | 4.56e-01 | 100.0% | 83.0% |
| 6pz0A01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.54 | 41.0 | 3.24e-01 | 90.5% | 37.7% |
| 3rlfG01 | 1.10.3720.10 | Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like | 0.54 | 49.0 | 3.33e-01 | 100.0% | 45.1% |
| 1br2A03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.52 | 45.0 | 4.16e-01 | 100.0% | 75.8% |
| 3c7jA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.52 | 44.0 | 3.67e-01 | 100.0% | 78.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078007 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 60.0 | 6.02e-01 | 97.3% | 100.0% |
| 5074956 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.62 | 39.0 | 3.83e-01 | 83.8% | 57.5% |
| 3666716 | 4133.1.1.1 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT | 0.61 | 50.0 | 4.88e-01 | 100.0% | 82.5% |
| 4013438 | 3003.1.1.0 ↗ | a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | 0.58 | 50.0 | 4.23e-01 | 97.3% | 73.6% |
| 3914513 | 181.1.1.6 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › PCM1_C | 0.56 | 42.0 | 3.70e-01 | 82.4% | 80.0% |
| 3989810 | 3291.1.1.5 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Relaxase_C | 0.55 | 42.0 | 3.87e-01 | 81.1% | 84.2% |
| 4022512 | 101.1.2.359 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD | 0.55 | 43.0 | 3.98e-01 | 90.5% | 71.0% |
| 4018842 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 44.0 | 3.69e-01 | 90.5% | 70.0% |
| 3584182 | 604.9.1.18 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Zip | 0.50 | 44.0 | 4.20e-01 | 97.3% | 98.8% |
| 3953824 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.50 | 45.0 | 3.69e-01 | 100.0% | 91.9% |
D2
medium
residues 1-151_382-416
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14890.12 best | Intein_splicing | 64.3 | 1.70e-17 | 100.0% | 91.0% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.90 | 56.0 | 6.48e-01 | 100.0% | 83.0% |
| 6vgwA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.88 | 53.0 | 6.15e-01 | 100.0% | 80.1% |
| 2imzA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.88 | 58.0 | 6.64e-01 | 100.0% | 87.3% |
| 1zdeA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.85 | 59.0 | 6.35e-01 | 100.0% | 81.2% |
| 2lwyA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.77 | 53.0 | 6.22e-01 | 100.0% | 94.9% |
| 4e2tB00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.76 | 59.0 | 6.20e-01 | 100.0% | 87.0% |
| 2cw8A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.74 | 57.0 | 6.00e-01 | 100.0% | 87.0% |
| 4o1sA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.74 | 56.0 | 5.93e-01 | 100.0% | 85.9% |
| 1at0A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.73 | 53.0 | 6.02e-01 | 100.0% | 95.9% |
| 1dq3A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.73 | 59.0 | 6.06e-01 | 100.0% | 87.6% |
| 5o9iA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.71 | 56.0 | 5.84e-01 | 100.0% | 87.1% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.69 | 54.0 | 5.67e-01 | 100.0% | 88.7% |
| 2lcjA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.69 | 58.0 | 5.89e-01 | 100.0% | 88.1% |
| 1am2A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.66 | 55.0 | 5.64e-01 | 100.0% | 89.0% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 19.0 | 2.59e-01 | 100.0% | 60.4% |
| 1dfaA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.50 | 47.0 | 4.62e-01 | 100.0% | 98.0% |
ECOD (87)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3952464 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.92 | 57.0 | 6.45e-01 | 100.0% | 80.0% |
| 3282306 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.91 | 56.0 | 6.64e-01 | 100.0% | 85.2% |
| 4872043 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.88 | 59.0 | 6.62e-01 | 100.0% | 84.0% |
| 2636473 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.88 | 53.0 | 6.06e-01 | 100.0% | 77.9% |
| 4998394 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.87 | 63.0 | 6.97e-01 | 97.8% | 88.4% |
| 5002632 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.86 | 59.0 | 6.61e-01 | 100.0% | 86.6% |
| 5065032 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.86 | 65.0 | 7.00e-01 | 100.0% | 87.9% |
| 3604113 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.85 | 55.0 | 6.26e-01 | 100.0% | 84.1% |
| 4975971 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 49.0 | 5.93e-01 | 100.0% | 83.8% |
| 4930433 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.83 | 58.0 | 6.35e-01 | 100.0% | 84.5% |
| 5066163 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 54.0 | 6.24e-01 | 100.0% | 87.1% |
| 5031634 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.82 | 58.0 | 6.27e-01 | 100.0% | 83.1% |
| 4993732 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 51.0 | 6.28e-01 | 100.0% | 93.6% |
| 5029355 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.81 | 56.0 | 6.23e-01 | 100.0% | 86.7% |
| 4342207 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.81 | 56.0 | 6.22e-01 | 100.0% | 86.7% |
| 4322985 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.81 | 50.0 | 3.88e-01 | 100.0% | 32.4% |
| 4997597 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.81 | 54.0 | 6.04e-01 | 100.0% | 84.0% |
| 5032319 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.80 | 56.0 | 6.20e-01 | 100.0% | 87.3% |
| 2323756 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.80 | 59.0 | 6.42e-01 | 100.0% | 88.6% |
| 4994372 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.80 | 50.0 | 6.29e-01 | 99.5% | 98.3% |
| 4993871 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.80 | 44.0 | 5.60e-01 | 86.0% | 88.7% |
| 4979631 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.79 | 56.0 | 6.21e-01 | 100.0% | 88.0% |
| 4971400 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.79 | 57.0 | 4.78e-01 | 100.0% | 46.8% |
| 5013038 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.78 | 56.0 | 6.02e-01 | 100.0% | 84.4% |
| 4983458 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.78 | 59.0 | 6.33e-01 | 100.0% | 87.9% |
| 4993813 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.78 | 57.0 | 6.21e-01 | 100.0% | 87.5% |
| 4975578 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.78 | 56.0 | 4.81e-01 | 100.0% | 49.8% |
| 5013937 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.78 | 58.0 | 6.19e-01 | 100.0% | 86.1% |
| 4978263 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.77 | 57.0 | 6.10e-01 | 100.0% | 84.8% |
| 5022295 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.77 | 58.0 | 6.23e-01 | 100.0% | 86.7% |
| 5023539 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.77 | 56.0 | 6.18e-01 | 100.0% | 89.0% |
| 3602706 | 69.1.1.3 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT | 0.77 | 54.0 | 6.21e-01 | 100.0% | 94.9% |
| 259963 | 69.1.1.3 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT | 0.77 | 53.0 | 6.22e-01 | 100.0% | 94.9% |
| 2553113 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.77 | 50.0 | 5.99e-01 | 100.0% | 94.5% |
| 4993437 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.77 | 55.0 | 6.29e-01 | 100.0% | 94.4% |
| 4948016 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.77 | 52.0 | 5.86e-01 | 98.4% | 86.0% |
| 5029540 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.76 | 57.0 | 6.12e-01 | 100.0% | 88.1% |
| 5030213 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.76 | 54.0 | 6.08e-01 | 100.0% | 90.7% |
| 4940699 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.75 | 54.0 | 5.97e-01 | 100.0% | 89.0% |
| 4127166 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.75 | 57.0 | 6.36e-01 | 100.0% | 97.3% |
| 4993853 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.74 | 57.0 | 6.08e-01 | 100.0% | 88.5% |
| 4997604 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.74 | 55.0 | 5.81e-01 | 100.0% | 82.9% |
| 4993480 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.74 | 54.0 | 5.90e-01 | 100.0% | 86.9% |
| 4984220 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.74 | 54.0 | 5.95e-01 | 100.0% | 89.7% |
| 4940943 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.74 | 57.0 | 6.03e-01 | 100.0% | 87.1% |
| 4983616 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.74 | 58.0 | 6.11e-01 | 100.0% | 88.8% |
| 2524072 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.74 | 58.0 | 6.04e-01 | 100.0% | 87.6% |
| 5028299 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.74 | 52.0 | 5.75e-01 | 100.0% | 87.1% |
| 3603108 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.73 | 53.0 | 5.98e-01 | 100.0% | 94.5% |
| 4999902 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.73 | 54.0 | 6.11e-01 | 100.0% | 97.2% |
| 4642797 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.73 | 56.0 | 5.86e-01 | 100.0% | 85.9% |
| 3603291 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.73 | 56.0 | 5.79e-01 | 100.0% | 83.4% |
| 5052154 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.73 | 55.0 | 5.89e-01 | 100.0% | 87.9% |
| 4594307 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.72 | 56.0 | 5.88e-01 | 100.0% | 86.5% |
| 5031914 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.72 | 59.0 | 5.94e-01 | 100.0% | 83.8% |
| 5065932 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.72 | 51.0 | 5.85e-01 | 100.0% | 95.7% |
| 3604439 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.72 | 54.0 | 5.71e-01 | 100.0% | 84.7% |
| 4932851 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.72 | 49.0 | 5.63e-01 | 100.0% | 94.1% |
| 4943244 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.72 | 56.0 | 5.84e-01 | 100.0% | 87.1% |
| 4998392 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.71 | 55.0 | 5.86e-01 | 100.0% | 88.5% |
| 4326329 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.71 | 53.0 | 5.61e-01 | 100.0% | 84.1% |
| 3257888 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.71 | 54.0 | 6.02e-01 | 100.0% | 96.7% |
| 4948019 | 69.1.1.17 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › MCM | 0.71 | 56.0 | 5.85e-01 | 100.0% | 86.9% |
| 5012957 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.70 | 57.0 | 5.87e-01 | 100.0% | 88.0% |
| 4975503 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.70 | 59.0 | 6.01e-01 | 100.0% | 89.4% |
| 3511246 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.70 | 52.0 | 5.48e-01 | 100.0% | 84.8% |
| 182766 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.69 | 58.0 | 5.89e-01 | 100.0% | 88.1% |
| 4315406 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.68 | 57.0 | 5.85e-01 | 100.0% | 89.4% |
| 4291841 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.68 | 53.0 | 5.65e-01 | 100.0% | 90.3% |
| 4993581 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.67 | 56.0 | 5.87e-01 | 100.0% | 94.1% |
| 4979989 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.67 | 55.0 | 5.61e-01 | 100.0% | 86.7% |
| 5066389 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.67 | 57.0 | 5.68e-01 | 100.0% | 86.3% |
| 3234017 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.66 | 52.0 | 5.43e-01 | 100.0% | 87.2% |
| 4996401 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.66 | 53.0 | 5.70e-01 | 100.0% | 95.6% |
| 4941327 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.66 | 49.0 | 5.51e-01 | 95.7% | 96.6% |
| 4971412 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.66 | 55.0 | 5.60e-01 | 99.5% | 88.9% |
| 5012699 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.64 | 55.0 | 5.83e-01 | 100.0% | 98.2% |
| 4680886 | 69.1.1.14 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint_2 | 0.63 | 52.0 | 5.52e-01 | 100.0% | 96.4% |
| 5009161 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.62 | 59.0 | 4.90e-01 | 100.0% | 91.7% |
| 4180552 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.61 | 51.0 | 5.43e-01 | 100.0% | 97.6% |
| 4977673 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.60 | 58.0 | 5.41e-01 | 100.0% | 91.1% |
| 5029854 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.60 | 56.0 | 5.37e-01 | 100.0% | 86.2% |
| 5014854 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.59 | 56.0 | 5.36e-01 | 100.0% | 88.8% |
| 4405940 | 242.1.1.8 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3, Intein_splicing | 0.59 | 55.0 | 4.01e-01 | 99.5% | 59.8% |
| 4993454 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.58 | 56.0 | 5.10e-01 | 100.0% | 89.4% |
| 4996523 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.58 | 55.0 | 5.38e-01 | 100.0% | 96.5% |
| 4544734 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.57 | 55.0 | 5.25e-01 | 100.0% | 91.0% |
D3
medium
residues 154-184
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4atgA00 | 1.25.40.770 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAF6, C-terminal HEAT repeat domain | 0.59 | 46.0 | 2.91e-01 | 100.0% | 75.9% |
D4
medium
residues 194-279
Domain cluster:
representative
D5
medium
residues 425-521_574-620
Domain cluster:
rep: gwf1_scaffold_41_prodigal-single.1__X__X__00068__D452-529_580-657
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01751.29 best | Toprim | 47.1 | 3.00e-12 | 65.3% | 78.1% |
| PF00986.27 | DNA_gyraseB_C | 43.7 | 3.60e-11 | 26.4% | 57.1% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xcqA01 | 3.40.50.670 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.86 | 62.0 | 5.59e-01 | 74.3% | 79.8% |
| 2zjtA01 | 3.40.50.670 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.76 | 60.0 | 6.66e-01 | 86.8% | 100.0% |
| 3cw9A01 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 31.0 | 2.93e-01 | 70.8% | 37.9% |
| 2fgyA03 | 3.30.1330.140 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Carboxysome Shell Carbonic Anhydrase, C-terminal domain | 0.59 | 40.0 | 4.44e-01 | 78.5% | 86.3% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 31.0 | 3.68e-01 | 77.8% | 79.2% |
| 1a79A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.54 | 32.0 | 3.77e-01 | 77.8% | 84.0% |
| 3pieC01 | 3.40.50.12390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 43.0 | 3.50e-01 | 84.7% | 73.7% |
| 4oxiA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.53 | 43.0 | 3.09e-01 | 86.8% | 67.5% |
| 2iu4A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.52 | 37.0 | 3.51e-01 | 72.2% | 67.3% |
| 1ultB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.52 | 43.0 | 3.10e-01 | 90.3% | 62.6% |
| 3etcA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.51 | 41.0 | 2.96e-01 | 88.2% | 54.0% |
| 3ieyA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.50 | 32.0 | 3.75e-01 | 77.1% | 92.0% |
| 5gxdA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.50 | 41.0 | 2.94e-01 | 90.3% | 61.1% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4124102 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.99 | 93.0 | 7.48e-01 | 95.8% | 81.7% |
| 3964707 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.98 | 92.0 | 7.59e-01 | 95.8% | 84.8% |
| 4406660 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.97 | 95.0 | 7.70e-01 | 100.0% | 82.1% |
| None | — | 0.97 | 94.0 | 7.65e-01 | 100.0% | 81.6% | |
| 3520955 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.96 | 93.0 | 7.31e-01 | 100.0% | 82.6% |
| 4945733 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.95 | 93.0 | 7.42e-01 | 100.0% | 85.6% |
| 2452014 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.95 | 89.0 | 7.27e-01 | 96.5% | 82.4% |
| None | — | 0.94 | 92.0 | 7.50e-01 | 100.0% | 85.5% | |
| 3164150 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.94 | 83.0 | 6.95e-01 | 91.0% | 84.0% |
| 4238497 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.94 | 88.0 | 7.26e-01 | 96.5% | 83.5% |
| 3213306 | 2006.1.3.21 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOPRIM_C | 0.90 | 86.0 | 6.70e-01 | 98.6% | 83.0% |
| 3789608 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.90 | 86.0 | 6.73e-01 | 100.0% | 82.2% |
| 4100838 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.88 | 84.0 | 7.00e-01 | 98.6% | 81.7% |
| 4170201 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.55 | 31.0 | 3.78e-01 | 75.7% | 84.2% |
| 3725765 | 2008.1.1.147 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 | 0.54 | 40.0 | 3.56e-01 | 77.1% | 81.5% |
| 3855591 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.53 | 43.0 | 3.22e-01 | 87.5% | 72.0% |
| 3693544 | 2008.1.1.147 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 | 0.51 | 41.0 | 3.14e-01 | 84.7% | 68.7% |
| 4959855 | 7515.1.1.8 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Metalloenzyme | 0.51 | 37.0 | 2.89e-01 | 75.7% | 54.9% |
| 5071475 | 2008.1.1.77 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C | 0.50 | 30.0 | 3.45e-01 | 80.6% | 82.0% |
| 3818551 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 35.0 | 2.99e-01 | 72.9% | 84.8% |
D6
medium
residues 522-573
Domain cluster:
rep: IMGVR_UViG_3300007953_000071-3300007953-Ga0105738_10003551__D32-93
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00986.27 best | DNA_gyraseB_C | 54.6 | 1.40e-14 | 51.9% | 41.3% |