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IMGVR_UViG_3300025748_000512-3300025748-Ga0208459_10048891

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300025748_000512-3300025748-Ga0208459_10048891 ↗
Kingdom:: archaea

Quality

92.4 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-11_128-183

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02772.22 best	S-AdoMet_synt_M	35.0	2.00e-08	92.3%	43.3%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1p7lA03	3.30.300.10	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 ›	0.91	69.0	5.73e-01	100.0%	49.1%
4odjA01	3.30.300.10	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 ›	0.78	67.0	5.41e-01	100.0%	52.2%
2f4lA02	2.40.10.120	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.62	35.0	4.06e-01	100.0%	81.4%
1usmA00	3.30.1360.20	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase	0.57	31.0	2.97e-01	76.9%	44.2%
1r1mA00	3.30.1330.60	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain	0.52	43.0	3.39e-01	93.8%	65.7%
1jb7A03	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.51	35.0	2.59e-01	72.3%	32.0%
1wibA00	3.30.1550.10	Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain	0.51	42.0	3.82e-01	100.0%	66.3%
1je5A00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.50	43.0	3.20e-01	100.0%	67.4%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4448090	327.17.1.7 ↗	a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_N, S-AdoMet_synt_M, S-AdoMet_synt_C	0.92	86.0	5.11e-01	100.0%	46.4%
3222684	327.17.1.3 ↗	a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_M	0.87	82.0	6.26e-01	100.0%	50.4%
4223260	283.1.1.0 ↗	a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase	0.60	47.0	2.92e-01	86.2%	74.6%
3056250	212.1.1.6 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal_S9	0.57	40.0	3.07e-01	73.8%	69.5%
4987730	1.1.5.44 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head	0.57	36.0	2.57e-01	81.5%	20.1%
4091257	1046.1.1.1 ↗	alpha bundles › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Peptidase_A8	0.56	38.0	2.91e-01	70.8%	56.8%
3782735	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.54	45.0	2.92e-01	90.8%	70.5%
3479141	2007.1.2.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I	0.54	47.0	3.66e-01	100.0%	64.0%
3871639	230.5.1.0 ↗	a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain	0.53	39.0	3.64e-01	78.5%	76.2%
3590260	212.1.1.0 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like	0.51	40.0	3.39e-01	90.8%	50.4%
3733996	5.1.2.8 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43	0.51	38.0	2.48e-01	86.2%	49.2%

D2 high residues 15-104

PDB

Domain cluster: rep: MK448720.1__QBX16563.1__Javan261_0003__00003__D10-88

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00438.26 best	S-AdoMet_synt_N	75.7	4.80e-21	100.0%	86.9%