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IMGVR_UViG_3300025770_000022-3300025770-Ga0209362_100018338
Arc-VirIMGVR_UViG_3300025770_000022-3300025770-Ga0209362_100018338
Identity
- Kingdom:
- archaea
Quality
85.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-72
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.75 | 52.0 | 5.11e-01 | 73.8% | 71.6% |
| 2b5dX02 | 1.20.1430.10 | Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain | 0.73 | 49.0 | 3.97e-01 | 70.5% | 42.1% |
| 4dylA02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.72 | 51.0 | 4.36e-01 | 73.8% | 60.6% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.71 | 55.0 | 5.15e-01 | 86.9% | 96.2% |
| 7p3rA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.69 | 47.0 | 2.95e-01 | 70.5% | 13.5% |
| 3hcwA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.69 | 49.0 | 3.80e-01 | 77.0% | 32.9% |
| 1rv2D04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.69 | 47.0 | 4.55e-01 | 72.1% | 81.4% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.69 | 54.0 | 4.83e-01 | 85.2% | 82.4% |
| 3rmiA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.69 | 53.0 | 4.53e-01 | 86.9% | 69.5% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.69 | 53.0 | 4.33e-01 | 85.2% | 81.0% |
| 1c5aA00 | 1.20.91.20 | Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) | 0.68 | 53.0 | 5.24e-01 | 85.2% | 86.2% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.67 | 61.0 | 5.22e-01 | 96.7% | 91.2% |
| 4cbeA00 | 1.20.120.1640 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.65 | 54.0 | 3.83e-01 | 98.4% | 99.0% |
| 4irnA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.63 | 48.0 | 3.93e-01 | 85.2% | 53.8% |
| 2k36A00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.62 | 46.0 | 3.58e-01 | 83.6% | 37.6% |
| 5mj6A04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.62 | 54.0 | 3.40e-01 | 100.0% | 75.2% |
| 1mhyG01 | 1.20.1280.10 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 | 0.61 | 47.0 | 4.55e-01 | 85.2% | 88.2% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 46.0 | 4.08e-01 | 85.2% | 83.9% |
| 1c6rA00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.57 | 46.0 | 4.05e-01 | 86.9% | 96.6% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 52.0 | 4.33e-01 | 100.0% | 88.2% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.57 | 46.0 | 4.62e-01 | 100.0% | 86.9% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 40.0 | 3.58e-01 | 100.0% | 54.9% |
| 4bx8A04 | 1.25.40.850 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Sec1/Munc18 (SM) protein, domain 3b | 0.56 | 43.0 | 3.79e-01 | 83.6% | 94.6% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.55 | 39.0 | 3.31e-01 | 73.8% | 53.1% |
| 2hzdA00 | 6.10.20.40 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain | 0.54 | 42.0 | 3.84e-01 | 86.9% | 81.7% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 42.0 | 4.10e-01 | 93.4% | 100.0% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 40.0 | 4.16e-01 | 100.0% | 89.7% |
| 1s70B02 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.51 | 36.0 | 2.90e-01 | 75.4% | 38.0% |
| 1rrzA00 | 1.20.970.20 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Glycogen synthesis protein GlgS | 0.51 | 34.0 | 3.39e-01 | 80.3% | 65.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3581419 | 6028.1.1.0 ↗ | alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor | 0.79 | 50.0 | 6.20e-01 | 77.0% | 100.0% |
| 3647374 | 164.1.1.20 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › PF28607 | 0.72 | 57.0 | 5.09e-01 | 85.2% | 90.6% |
| 4998325 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.72 | 57.0 | 4.51e-01 | 85.2% | 71.7% |
| 4628458 | 604.1.1.226 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26877 | 0.68 | 53.0 | 4.75e-01 | 85.2% | 91.8% |
| None | — | 0.67 | 60.0 | 3.44e-01 | 96.7% | 11.4% | |
| 1759951 | 5086.1.1.88 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CyaD | 0.67 | 53.0 | 3.71e-01 | 85.2% | 28.6% |
| 3907132 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.67 | 50.0 | 3.50e-01 | 80.3% | 81.6% |
| 4357993 | 3291.1.1.58 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › QcrA_N | 0.65 | 45.0 | 3.66e-01 | 73.8% | 55.8% |
| 3686205 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.63 | 51.0 | 3.70e-01 | 86.9% | 41.9% |
| 4036645 | 5086.1.1.92 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE | 0.62 | 48.0 | 3.36e-01 | 83.6% | 27.2% |
| 5018187 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.61 | 47.0 | 4.68e-01 | 85.2% | 96.9% |
| 5063209 | 1079.1.1.0 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA | 0.60 | 51.0 | 3.51e-01 | 95.1% | 97.2% |
| 4059306 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.60 | 52.0 | 3.70e-01 | 98.4% | 93.2% |
| 4379139 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.59 | 53.0 | 3.04e-01 | 96.7% | 11.3% |
| 3789467 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.59 | 53.0 | 4.52e-01 | 100.0% | 63.2% |
| 3974193 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.59 | 52.0 | 3.65e-01 | 100.0% | 91.8% |
| 4959234 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.57 | 44.0 | 3.71e-01 | 82.0% | 76.0% |
| 4874990 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.55 | 39.0 | 3.83e-01 | 83.6% | 68.1% |
| 5003923 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.55 | 45.0 | 4.35e-01 | 100.0% | 78.6% |
| 5079006 | 101.1.2.27 ↗ | alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind | 0.55 | 48.0 | 3.71e-01 | 100.0% | 51.4% |
| 4343332 | 3166.1.1.1 ↗ | alpha arrays › 60S ribosomal protein rpL36 (L36e) › 60S ribosomal protein rpL36 (L36e) › 60S ribosomal protein rpL36 (L36e) › Ribosomal_L36e | 0.54 | 40.0 | 3.56e-01 | 86.9% | 53.2% |
| 3632779 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.52 | 36.0 | 2.91e-01 | 83.6% | 34.6% |