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IMGVR_UViG_3300025770_000022-3300025770-Ga0209362_10001837
Arc-VirIMGVR_UViG_3300025770_000022-3300025770-Ga0209362_10001837
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-84_255-335
Domain cluster:
rep: ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00239__D27-94_369-402_628-662
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09215.17 best | Phage-Gp8 | 35.3 | 9.70e-09 | 55.0% | 20.2% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n7zA01 | 2.60.340.10 | Mainly Beta › Sandwich › baseplate structural protein gp8, domain 1 › baseplate structural protein gp8, domain 1 | 0.88 | 84.0 | 7.67e-01 | 100.0% | 82.4% |
| 2pn5A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.54 | 28.0 | 3.19e-01 | 70.2% | 63.5% |
| 1xe1A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 32.0 | 3.72e-01 | 79.4% | 83.5% |
| 3d30A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.54 | 28.0 | 3.20e-01 | 97.7% | 66.0% |
| 5dmyA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 31.0 | 3.26e-01 | 90.8% | 62.8% |
| 4ypjA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 30.0 | 3.18e-01 | 90.8% | 61.3% |
| 3og6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 27.0 | 3.08e-01 | 92.4% | 64.6% |
| 4gioA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 32.0 | 3.68e-01 | 100.0% | 85.4% |
| 1f0lA03 | 2.60.40.700 | Mainly Beta › Sandwich › Immunoglobulin-like › Diphtheria toxin, receptor-binding domain | 0.50 | 35.0 | 3.29e-01 | 71.0% | 66.2% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2504393 | 3899.1.1.2 ↗ | beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 › BW3TFN | 0.73 | 69.0 | 6.09e-01 | 100.0% | 81.7% |
| 4963491 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 32.0 | 3.63e-01 | 70.2% | 67.4% |
| 4969268 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 32.0 | 3.60e-01 | 70.2% | 66.7% |
| 5060542 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.59 | 32.0 | 3.70e-01 | 70.2% | 72.6% |
| 5069414 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.57 | 33.0 | 3.53e-01 | 70.2% | 66.4% |
| 5070734 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.55 | 31.0 | 3.36e-01 | 89.3% | 64.5% |
| 5068612 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.54 | 28.0 | 3.17e-01 | 89.3% | 64.0% |
| 5060774 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.54 | 32.0 | 3.38e-01 | 89.3% | 65.2% |
| 3774505 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.54 | 36.0 | 2.99e-01 | 72.5% | 37.4% |
| 5056674 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 31.0 | 3.46e-01 | 70.2% | 70.5% |
| 4961062 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 31.0 | 3.37e-01 | 70.2% | 67.0% |
| 3867993 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 35.0 | 3.01e-01 | 72.5% | 42.9% |
| 4264346 | 11.1.1.63 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP_alpha | 0.51 | 33.0 | 3.22e-01 | 70.2% | 57.3% |
| 4947719 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 30.0 | 2.78e-01 | 72.5% | 43.0% |
| 4945416 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 35.0 | 3.15e-01 | 72.5% | 52.6% |
| 3520278 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 34.0 | 3.16e-01 | 71.8% | 51.4% |
D2
high
residues 87-251
Domain cluster:
rep: NC_055737.1__YP_010093657.1__KNT81_gp120__00120__D86-243
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n7zA02 | 2.170.290.10 | Mainly Beta › Beta Complex › baseplate structural protein gp8, domain 2 › baseplate structural protein gp8, domain 2 | 0.69 | 62.0 | 6.32e-01 | 100.0% | 97.5% |