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IMGVR_UViG_3300025770_000733-3300025770-Ga0209362_10139205
Arc-VirIMGVR_UViG_3300025770_000733-3300025770-Ga0209362_10139205
Identity
- Kingdom:
- archaea
Quality
90.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-59
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a1yA00 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.77 | 59.0 | 5.95e-01 | 96.5% | 82.8% |
| 3lmmB05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 55.0 | 5.46e-01 | 100.0% | 73.8% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.74 | 59.0 | 5.75e-01 | 86.0% | 87.1% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 62.0 | 5.57e-01 | 100.0% | 74.4% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.65 | 49.0 | 4.11e-01 | 100.0% | 46.6% |
| 2lrdA00 | 1.10.10.1840 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 42.0 | 4.16e-01 | 87.7% | 62.3% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.64 | 41.0 | 3.64e-01 | 70.2% | 43.2% |
| 1gnlA01 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 43.0 | 3.25e-01 | 71.9% | 56.8% |
| 7y7oA01 | 3.40.390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" | 0.60 | 42.0 | 3.21e-01 | 75.4% | 30.1% |
| 3tj4A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 49.0 | 3.91e-01 | 98.2% | 43.9% |
| 3lmfA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 40.0 | 3.36e-01 | 73.7% | 78.9% |
| 6hxlB01 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.58 | 49.0 | 3.93e-01 | 100.0% | 91.7% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.57 | 44.0 | 3.60e-01 | 87.7% | 43.1% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 46.0 | 4.25e-01 | 98.2% | 87.7% |
| 6hftA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 39.0 | 3.13e-01 | 100.0% | 35.4% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 36.0 | 3.46e-01 | 93.0% | 60.0% |
| 2fp1B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.53 | 46.0 | 3.39e-01 | 100.0% | 39.0% |
| 1rfzA00 | 1.10.3760.10 | Mainly Alpha › Orthogonal Bundle › YutG-like › PgpA-like | 0.53 | 35.0 | 2.66e-01 | 70.2% | 25.6% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 40.0 | 3.11e-01 | 100.0% | 38.7% |
| 3u4qB04 | 6.10.140.1030 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 37.0 | 3.61e-01 | 100.0% | 68.1% |
| 2oifB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 43.0 | 3.29e-01 | 100.0% | 90.1% |
| 4kxwA03 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 37.0 | 2.90e-01 | 80.7% | 94.7% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3723084 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.80 | 70.0 | 6.62e-01 | 100.0% | 92.9% |
| 4940562 | 179.1.1.0 ↗ | alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like | 0.79 | 64.0 | 6.38e-01 | 96.5% | 85.0% |
| 4426661 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.77 | 61.0 | 5.89e-01 | 100.0% | 76.9% |
| 4956762 | 1091.1.1.0 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 | 0.76 | 58.0 | 5.93e-01 | 96.5% | 87.3% |
| 4028797 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.76 | 60.0 | 5.82e-01 | 100.0% | 76.9% |
| 4030520 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 68.0 | 5.37e-01 | 100.0% | 75.7% |
| 3599725 | 1091.1.1.0 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 | 0.76 | 59.0 | 5.74e-01 | 100.0% | 76.9% |
| 3217621 | 101.1.2.265 ↗ | alpha arrays › HTH › HTH › winged helix domain › Stork_head | 0.75 | 68.0 | 6.32e-01 | 100.0% | 94.3% |
| 3516468 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.75 | 59.0 | 5.53e-01 | 100.0% | 71.4% |
| 3490008 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 61.0 | 5.84e-01 | 98.2% | 81.5% |
| 5049986 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 64.0 | 5.44e-01 | 100.0% | 86.3% |
| 5056343 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 62.0 | 4.92e-01 | 100.0% | 48.0% |
| 3313157 | 101.1.2.524 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7625 | 0.72 | 64.0 | 5.87e-01 | 100.0% | 89.3% |
| 3943035 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.72 | 61.0 | 5.81e-01 | 91.2% | 84.6% |
| 4009124 | 639.2.1.5 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 | 0.71 | 59.0 | 5.88e-01 | 91.2% | 90.0% |
| 3472278 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.70 | 62.0 | 5.66e-01 | 100.0% | 88.0% |
| 5005257 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.69 | 59.0 | 4.27e-01 | 100.0% | 33.5% |
| 3889516 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.69 | 59.0 | 4.92e-01 | 100.0% | 71.4% |
| 5001690 | 3276.1.1.0 ↗ | alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor | 0.67 | 57.0 | 5.37e-01 | 98.2% | 80.0% |
| 4374802 | 639.2.1.2 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › DUF2767 | 0.67 | 55.0 | 5.34e-01 | 91.2% | 87.7% |
| 3931563 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.67 | 56.0 | 5.54e-01 | 98.2% | 91.7% |
| 3250201 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.67 | 57.0 | 5.54e-01 | 98.2% | 87.7% |
| 5022018 | 4973.1.1.0 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core | 0.67 | 50.0 | 4.77e-01 | 98.2% | 68.6% |
| 3500575 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.66 | 56.0 | 5.52e-01 | 98.2% | 95.0% |
| 3728568 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.66 | 42.0 | 4.17e-01 | 70.2% | 61.7% |
| 3255275 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 53.0 | 5.28e-01 | 100.0% | 86.7% |
| 3915254 | 563.2.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like | 0.66 | 56.0 | 4.32e-01 | 100.0% | 55.0% |
| 3936163 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.65 | 56.0 | 5.44e-01 | 100.0% | 89.2% |
| 3928650 | 101.1.1.315 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CCD_aECM | 0.65 | 54.0 | 5.36e-01 | 100.0% | 95.0% |
| 3932319 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.65 | 54.0 | 4.70e-01 | 98.2% | 60.0% |
| 3583380 | 101.1.2.558 ↗ | alpha arrays › HTH › HTH › winged helix domain › CCD_aECM | 0.65 | 52.0 | 5.19e-01 | 94.7% | 90.0% |
| 5059049 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.63 | 53.0 | 3.42e-01 | 100.0% | 36.3% |
| 4206040 | 4044.1.1.1 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane | 0.62 | 43.0 | 3.14e-01 | 71.9% | 68.4% |
| 3217350 | 101.1.1.315 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CCD_aECM | 0.62 | 50.0 | 5.07e-01 | 98.2% | 100.0% |
| 3991367 | 101.1.2.558 ↗ | alpha arrays › HTH › HTH › winged helix domain › CCD_aECM | 0.61 | 49.0 | 4.96e-01 | 93.0% | 96.4% |
| 3785494 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.60 | 50.0 | 4.67e-01 | 100.0% | 81.3% |
| 3594324 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 48.0 | 4.65e-01 | 100.0% | 100.0% |
| 3552352 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.59 | 43.0 | 3.82e-01 | 78.9% | 55.3% |
| 3575287 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.59 | 47.0 | 3.39e-01 | 91.2% | 36.0% |
| 4966167 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 46.0 | 2.83e-01 | 100.0% | 17.5% |
| 4334043 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.56 | 45.0 | 3.46e-01 | 91.2% | 80.7% |
| 4508258 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.55 | 44.0 | 3.33e-01 | 91.2% | 80.7% |
| 5034435 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.55 | 36.0 | 3.22e-01 | 73.7% | 48.8% |
| 4679579 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.54 | 45.0 | 3.45e-01 | 96.5% | 81.4% |
| 3716553 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.53 | 33.0 | 3.25e-01 | 98.2% | 56.7% |
| 4358185 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.52 | 41.0 | 3.24e-01 | 93.0% | 74.8% |