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IMGVR_UViG_3300025771_005310-3300025771-Ga0208427_10009312

Arc-Vir

IMGVR_UViG_3300025771_005310-3300025771-Ga0208427_10009312

Quality

88.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 41.0 4.05e-01 82.0% 54.5%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.68 58.0 4.86e-01 95.1% 89.6%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.68 60.0 4.66e-01 100.0% 71.6%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.67 58.0 4.62e-01 98.4% 80.2%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 57.0 4.65e-01 100.0% 80.2%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 56.0 4.71e-01 96.7% 89.4%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 57.0 4.71e-01 100.0% 82.0%
2ettA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 53.0 4.26e-01 96.7% 72.7%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.61 40.0 4.14e-01 70.5% 69.6%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 48.0 4.82e-01 91.8% 87.1%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 52.0 4.32e-01 100.0% 89.7%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 41.0 3.99e-01 95.1% 62.7%
1x31A02 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.58 45.0 2.81e-01 86.9% 99.0%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 49.0 4.26e-01 96.7% 90.8%
3vueA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 39.0 2.65e-01 78.7% 15.9%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.57 40.0 3.45e-01 72.1% 59.0%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 40.0 4.18e-01 78.7% 85.5%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 43.0 3.28e-01 85.2% 68.2%
4oc8A02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 46.0 3.43e-01 95.1% 61.0%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 48.0 3.72e-01 100.0% 97.2%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 37.0 3.34e-01 70.5% 81.6%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 46.0 3.79e-01 96.7% 83.3%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 45.0 4.23e-01 100.0% 76.3%
1k07A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 42.0 2.85e-01 88.5% 47.7%
6ziwI01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 37.0 3.45e-01 72.1% 88.5%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 37.0 3.36e-01 98.4% 49.5%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.53 45.0 3.73e-01 96.7% 55.8%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 41.0 3.77e-01 90.2% 97.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 3.65e-01 77.0% 69.0%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 38.0 3.12e-01 78.7% 46.8%
1qyaB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 32.0 2.38e-01 91.8% 25.7%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.57e-01 91.8% 81.7%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 3.65e-01 95.1% 78.7%
5wcmA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 40.0 2.74e-01 88.5% 46.0%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 3.29e-01 98.4% 55.7%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.51 41.0 3.42e-01 91.8% 81.9%
5nr1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 40.0 3.49e-01 91.8% 76.4%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.74e-01 98.4% 83.3%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 2.93e-01 77.0% 92.4%
7mwzD01 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.51 40.0 3.06e-01 95.1% 62.2%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.31e-01 98.4% 74.3%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.50 40.0 3.29e-01 91.8% 64.2%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4023312 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.69 58.0 4.65e-01 95.1% 90.4%
1489902 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.68 58.0 4.86e-01 95.1% 89.6%
3738197 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.68 59.0 4.37e-01 98.4% 78.2%
3603731 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 58.0 4.42e-01 93.4% 72.1%
3586665 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 54.0 5.62e-01 88.5% 98.2%
3709649 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.68 61.0 4.74e-01 100.0% 71.5%
3260099 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 4.14e-01 91.8% 48.9%
3408101 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 58.0 4.55e-01 100.0% 70.4%
3251342 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 56.0 4.55e-01 96.7% 83.3%
3995204 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.66 55.0 5.43e-01 93.4% 92.3%
3709549 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.65 57.0 4.20e-01 100.0% 60.0%
402817 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.64 53.0 4.51e-01 95.1% 82.1%
4027440 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.64 55.0 4.58e-01 98.4% 87.3%
3927894 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.64 56.0 4.37e-01 100.0% 74.8%
3738467 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.64 54.0 4.22e-01 98.4% 71.4%
3478366 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.64 53.0 4.54e-01 96.7% 85.7%
158729 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 53.0 4.33e-01 96.7% 76.9%
3591633 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.63 47.0 3.98e-01 93.4% 46.4%
4486857 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 54.0 4.22e-01 98.4% 73.3%
3864474 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 53.0 3.95e-01 96.7% 53.9%
3798524 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.62 53.0 4.40e-01 98.4% 80.0%
3479397 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.62 53.0 4.45e-01 96.7% 64.8%
3714703 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.61 48.0 4.12e-01 90.2% 53.0%
3783181 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 51.0 4.26e-01 95.1% 86.4%
3262159 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 53.0 4.21e-01 100.0% 70.0%
4983267 2004.1.1.94 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.61 50.0 3.74e-01 96.7% 74.3%
3619859 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 51.0 4.18e-01 96.7% 74.2%
3315492 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.60 51.0 4.05e-01 98.4% 83.7%
5000498 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.59 42.0 4.25e-01 100.0% 78.3%
5068106 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 47.0 4.62e-01 88.5% 80.9%
4979786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.59 43.0 3.52e-01 98.4% 40.0%
4963795 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.43e-01 91.8% 98.7%
4934542 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.58 38.0 3.56e-01 70.5% 61.2%
4965392 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.58 40.0 4.22e-01 83.6% 90.0%
4546371 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.56 46.0 3.77e-01 95.1% 46.7%
3439912 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 48.0 4.16e-01 100.0% 66.0%
3812213 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.56 47.0 3.59e-01 100.0% 40.0%
4076804 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.56 34.0 3.57e-01 70.5% 63.6%
4275948 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.56 47.0 3.94e-01 100.0% 56.7%
3938388 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 47.0 2.69e-01 95.1% 59.9%
3706713 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 45.0 2.73e-01 95.1% 19.1%
3933230 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.56 45.0 3.75e-01 100.0% 67.7%
3195285 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.55 47.0 3.14e-01 95.1% 50.4%
3504365 633.23.1.38 alpha bundles › Bromodomain-like › Claudin › Claudin › TMEM127 0.55 43.0 2.96e-01 86.9% 25.3%
4314504 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 48.0 3.76e-01 98.4% 78.5%
3930311 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.55 43.0 3.61e-01 98.4% 45.8%
3978756 3197.1.1.1 a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.55 43.0 3.54e-01 90.2% 66.7%
3604446 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.54 47.0 2.72e-01 100.0% 94.6%
4995163 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.53 42.0 2.98e-01 95.1% 43.3%
5007104 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.53 45.0 3.76e-01 100.0% 54.3%
3100772 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.53 41.0 3.71e-01 95.1% 61.6%
3882852 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.53 43.0 3.10e-01 100.0% 29.1%
3411359 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.34e-01 88.5% 67.2%
4973804 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 35.0 3.37e-01 88.5% 58.7%
3427908 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 43.0 3.83e-01 100.0% 68.4%
3636596 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 36.0 3.89e-01 82.0% 92.0%
5081495 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.56e-01 98.4% 58.3%
4043017 2.1.1.173 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RADX 0.52 42.0 3.28e-01 98.4% 57.5%
3792405 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 42.0 2.54e-01 98.4% 11.5%
4390303 5.1.3.238 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.51 38.0 2.26e-01 83.6% 54.8%
3926535 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.51 42.0 3.47e-01 100.0% 51.2%
3939024 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.51 40.0 2.96e-01 100.0% 39.5%
3598074 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 3.63e-01 98.4% 72.4%
5008587 2484.1.1.330 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.50 42.0 2.80e-01 100.0% 43.1%
3516660 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 41.0 3.69e-01 100.0% 67.4%