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IMGVR_UViG_3300025776_000004-3300025776-Ga0208699_100029811

Arc-Vir

IMGVR_UViG_3300025776_000004-3300025776-Ga0208699_100029811

Quality

82.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-163
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.74 50.0 5.19e-01 80.0% 74.7%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.73 55.0 5.72e-01 91.6% 87.2%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.72 53.0 5.70e-01 89.5% 93.6%
1v5vA03 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.72 52.0 5.78e-01 90.5% 97.3%
4paaA05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.71 52.0 5.66e-01 89.5% 93.7%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.69 45.0 4.82e-01 76.8% 78.8%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.69 58.0 5.56e-01 92.6% 98.2%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.68 51.0 5.25e-01 91.6% 83.5%
3mcaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 52.0 4.82e-01 83.2% 64.4%
3girA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.68 50.0 5.36e-01 89.5% 94.9%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 51.0 5.05e-01 82.1% 80.2%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.65 50.0 5.06e-01 83.2% 81.9%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.65 51.0 5.10e-01 83.2% 81.4%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 53.0 5.32e-01 88.4% 96.8%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 54.0 5.47e-01 89.5% 95.7%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.65 49.0 4.77e-01 81.1% 83.8%
1zunB03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 53.0 5.15e-01 91.6% 97.2%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.63 50.0 4.97e-01 84.2% 83.5%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 53.0 5.16e-01 92.6% 93.2%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 52.0 5.10e-01 92.6% 96.1%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 51.0 5.03e-01 87.4% 84.0%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 44.0 3.84e-01 75.8% 70.4%
1r5bA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 51.0 4.91e-01 93.7% 96.4%
4mb7A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.60 47.0 4.30e-01 83.2% 82.5%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 44.0 3.67e-01 77.9% 68.6%
2bm0A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 47.0 4.64e-01 86.3% 77.7%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 3.50e-01 72.6% 48.9%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 48.0 4.88e-01 94.7% 95.7%
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 41.0 4.44e-01 88.4% 94.9%
1dj0A01 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.55 47.0 4.20e-01 96.8% 100.0%
6w5yC01 3.90.310.10 Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain 0.55 44.0 3.89e-01 88.4% 90.3%
4pbdA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 3.76e-01 73.7% 81.4%
2wanA01 2.60.40.1130 Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain 0.54 42.0 4.23e-01 88.4% 85.3%
1fohA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.54 47.0 3.92e-01 100.0% 61.5%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 44.0 4.53e-01 96.8% 94.4%
3cedA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 44.0 4.44e-01 96.8% 90.8%
1c7sA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.40e-01 96.8% 52.1%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 4.17e-01 89.5% 89.7%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.51 42.0 4.22e-01 90.5% 91.7%
4npjB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 43.0 3.85e-01 96.8% 82.4%
2pn5A10 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.50 39.0 3.43e-01 93.7% 54.8%
4fl4F02 2.60.40.4130 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.29e-01 86.3% 50.3%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3289340 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 51.0 5.48e-01 77.9% 85.0%
4982501 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 53.0 5.35e-01 77.9% 86.3%
4224505 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.71 53.0 5.73e-01 91.6% 95.0%
4944212 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.69 58.0 6.00e-01 90.5% 98.9%
5026244 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 50.0 5.19e-01 75.8% 84.4%
4278681 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.69 53.0 5.55e-01 91.6% 91.8%
4274453 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.69 55.0 5.84e-01 90.5% 96.5%
3237729 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 51.0 4.98e-01 78.9% 75.2%
3210962 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 51.0 5.20e-01 78.9% 85.3%
3394046 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.68 55.0 5.52e-01 91.6% 86.3%
4977991 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 51.0 4.57e-01 77.9% 79.2%
4066625 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.68 51.0 4.59e-01 78.9% 63.1%
3761477 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.68 58.0 5.46e-01 92.6% 80.0%
159 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.68 51.0 5.27e-01 91.6% 84.4%
3568840 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.68 54.0 5.49e-01 91.6% 86.3%
3535347 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 50.0 4.74e-01 77.9% 86.1%
4026033 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.68 53.0 5.06e-01 83.2% 77.3%
3636050 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.67 55.0 5.19e-01 88.4% 89.6%
4949489 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.67 55.0 5.77e-01 87.4% 98.8%
4936008 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.67 49.0 4.93e-01 75.8% 86.3%
3997269 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.67 56.0 5.48e-01 91.6% 83.5%
5001586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 49.0 5.10e-01 77.9% 84.4%
4990285 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.67 56.0 5.78e-01 89.5% 96.6%
3605852 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 51.0 5.18e-01 81.1% 81.1%
4988964 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 54.0 5.67e-01 88.4% 98.8%
4328622 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.66 50.0 4.67e-01 78.9% 69.6%
4963592 1.1.8.26 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › PF26503 0.66 46.0 5.25e-01 74.7% 97.1%
4952364 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.66 48.0 5.07e-01 75.8% 87.1%
5075927 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 55.0 5.76e-01 90.5% 100.0%
3597995 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 57.0 5.47e-01 95.8% 84.5%
3566270 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.65 54.0 5.59e-01 91.6% 95.6%
4983877 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.65 54.0 5.56e-01 92.6% 95.6%
4028218 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.65 53.0 4.71e-01 86.3% 86.2%
3688095 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 49.0 4.58e-01 81.1% 90.0%
3219717 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.64 54.0 5.55e-01 90.5% 100.0%
4011585 1.1.8.18 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.64 47.0 4.03e-01 77.9% 64.5%
5055336 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.64 53.0 5.44e-01 89.5% 95.6%
4072524 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.64 48.0 4.59e-01 80.0% 74.5%
5046884 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.63 53.0 5.44e-01 91.6% 98.9%
4943219 205.1.1.123 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer2_BFD 0.63 45.0 3.89e-01 86.3% 46.5%
3206575 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.63 52.0 4.94e-01 90.5% 76.4%
4961202 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 50.0 5.18e-01 87.4% 94.4%
3725596 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 53.0 4.88e-01 94.7% 71.2%
4930314 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.63 51.0 5.37e-01 89.5% 100.0%
1563513 1.1.8.10 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Ski7_3rd 0.63 52.0 5.05e-01 90.5% 88.8%
3688604 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.62 51.0 5.03e-01 91.6% 98.1%
3407712 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.62 54.0 5.41e-01 96.8% 98.0%
4379249 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 47.0 4.30e-01 80.0% 67.2%
2137681 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 46.0 4.43e-01 83.2% 68.8%
160389 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 45.0 4.14e-01 76.8% 61.0%
169881 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.60 44.0 3.55e-01 78.9% 59.6%
4946793 11.1.1.1392 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Metallophos 0.60 45.0 4.15e-01 89.5% 62.5%
5032717 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 4.47e-01 89.5% 81.7%
3256508 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 4.48e-01 91.6% 88.2%
5033801 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.45e-01 90.5% 78.3%
3945834 1.1.7.79 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND 0.57 43.0 4.24e-01 80.0% 90.0%
4047960 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.56 44.0 4.57e-01 92.6% 96.5%
3249113 11.1.1.698 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.55 40.0 4.06e-01 89.5% 76.8%
3390626 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.55 38.0 4.30e-01 73.7% 98.6%
3250196 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.55 45.0 4.20e-01 89.5% 75.8%
5035871 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 38.0 3.82e-01 86.3% 74.7%
3868227 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 4.16e-01 88.4% 89.5%
3249576 11.1.1.698 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.52 36.0 3.80e-01 88.4% 81.2%
4527829 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 4.00e-01 87.4% 83.2%
3592095 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 42.0 3.79e-01 90.5% 91.0%
3389168 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.50 40.0 3.15e-01 86.3% 52.7%
D2 medium residues 1-65
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16075.11 best DUF4815 34.0 1.60e-08 84.6% 9.1%