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IMGVR_UViG_3300025812_000146-3300025812-Ga0208457_10067021

Arc-Vir

IMGVR_UViG_3300025812_000146-3300025812-Ga0208457_10067021

Identity

Kingdom:
archaea

Quality

79.2 mean pLDDT

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-68
PDB
Domain cluster: rep: IMGVR_UViG_3300005835_000030-3300005835-Ga0078910_10246820__D18-37_39-77
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.76 55.0 4.77e-01 100.0% 50.0%
4wxjB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 42.0 3.42e-01 84.8% 84.9%
3m3kA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 43.0 3.46e-01 87.9% 87.7%
5kd5A01 1.10.390.30 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Peptidase M60, enhancin-like domain 3 0.53 44.0 3.31e-01 97.0% 91.6%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 2.93e-01 90.9% 34.6%
3w4rA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 44.0 2.88e-01 97.0% 58.4%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 42.0 3.07e-01 93.9% 49.5%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940785 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.97 86.0 6.89e-01 92.4% 53.0%
4639076 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 51.0 4.47e-01 89.4% 46.3%
4142142 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 43.0 3.32e-01 90.9% 32.9%
3390802 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 38.0 4.26e-01 77.3% 95.6%
3422404 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.57 38.0 3.21e-01 89.4% 40.0%
3335828 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 41.0 3.71e-01 81.8% 82.1%
3785275 109.1.1.4 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › MetRS-N 0.55 45.0 3.49e-01 89.4% 78.6%
3536692 386.1.1.267 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C17orf113 0.55 39.0 3.84e-01 75.8% 90.0%
3720076 386.1.1.9 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-U1 0.54 37.0 3.74e-01 77.3% 73.8%
3207961 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.50 41.0 3.55e-01 93.9% 88.2%
D2 high residues 74-151
PDB
Domain cluster: rep: IMGVR_UViG_3300009362_000174-3300009362-Ga0118673_10090134__D7-95
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qz5A03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 45.0 4.01e-01 93.6% 50.0%
4fo0A04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 45.0 3.95e-01 93.6% 49.1%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 45.0 3.89e-01 98.7% 46.2%
2nyvA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 41.0 4.49e-01 92.3% 84.4%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.59 42.0 4.58e-01 89.7% 95.2%
4mtdA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.56 36.0 3.86e-01 83.3% 79.4%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 29.0 3.55e-01 87.2% 79.2%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 32.0 3.11e-01 87.2% 48.4%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 43.0 3.56e-01 88.5% 84.1%
2v25A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 36.0 3.04e-01 93.6% 42.3%
2dsjA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.51 32.0 3.42e-01 92.3% 73.1%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.50 35.0 3.25e-01 75.6% 59.6%
2b67A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.50 41.0 3.05e-01 89.7% 53.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003620 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.85 79.0 5.02e-01 100.0% 41.8%
4931925 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 5.41e-01 98.7% 75.2%
3723442 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.60 41.0 3.47e-01 71.8% 56.2%
4680947 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.59 51.0 4.85e-01 100.0% 87.4%
4032235 3264.1.1.0 ↗ 0.59 42.0 3.32e-01 75.6% 61.2%
5067702 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.55 43.0 3.38e-01 87.2% 82.2%
3479475 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 43.0 3.09e-01 88.5% 39.5%
1556781 3146.1.1.2 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_UL1 0.54 38.0 3.21e-01 73.1% 47.7%
4109408 321.1.1.7 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.53 40.0 2.67e-01 85.9% 74.1%
3848502 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.53 42.0 3.04e-01 91.0% 66.4%
3595165 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 40.0 2.80e-01 84.6% 28.9%
4474942 4337.1.1.0 ↗ a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.52 30.0 3.12e-01 78.2% 56.0%
3224397 221.1.1.153 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_PRKD1_N 0.52 40.0 3.91e-01 92.3% 76.5%
4298859 321.1.1.7 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.51 39.0 2.62e-01 85.9% 24.0%
4030456 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.51 41.0 3.02e-01 92.3% 65.4%
3776285 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.51 41.0 2.76e-01 92.3% 45.0%
3635936 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.51 35.0 3.48e-01 71.8% 100.0%
3414279 2004.1.1.186 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.51 44.0 3.18e-01 96.2% 80.0%
3813366 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.51 31.0 3.05e-01 91.0% 52.9%
3938551 5.1.12.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.50 42.0 2.89e-01 93.6% 84.2%
4025488 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.50 34.0 2.34e-01 71.8% 36.5%
4951908 2007.1.14.32 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › 2-thiour_desulf 0.50 44.0 3.14e-01 98.7% 98.3%
D3 high residues 411-492
PDB
Domain cluster: rep: IMGVR_UViG_3300033781_000034-3300033781-Ga0326759_00004_125332_128028__D740-834
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 72.0 7.52e-01 96.3% 97.4%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 6.06e-01 97.6% 86.7%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 62.0 5.99e-01 97.6% 86.8%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 5.43e-01 97.6% 85.7%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 5.44e-01 97.6% 80.9%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 61.0 5.75e-01 97.6% 99.0%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.68 57.0 5.75e-01 93.9% 95.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.86e-01 92.7% 67.0%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 44.0 5.07e-01 74.4% 96.5%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 4.66e-01 96.3% 63.1%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 5.44e-01 98.8% 84.9%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 59.0 5.93e-01 96.3% 96.3%
1u5tB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 59.0 5.87e-01 96.3% 98.8%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.19e-01 98.8% 72.4%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 60.0 5.55e-01 98.8% 79.6%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 5.28e-01 92.7% 88.5%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.97e-01 96.3% 78.8%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 4.85e-01 98.8% 69.9%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 4.89e-01 97.6% 65.0%
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 44.0 4.99e-01 90.2% 100.0%
4fcyB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 47.0 5.08e-01 96.3% 95.4%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.85e-01 96.3% 80.5%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.73e-01 97.6% 74.7%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 5.01e-01 96.3% 77.1%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 5.25e-01 98.8% 86.7%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 4.85e-01 98.8% 67.9%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.97e-01 97.6% 80.0%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.88e-01 97.6% 80.7%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 5.07e-01 97.6% 97.1%
2kpmA01 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.63 51.0 5.35e-01 91.5% 98.7%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 53.0 5.05e-01 95.1% 81.1%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.96e-01 98.8% 76.7%
3bz6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 5.12e-01 96.3% 86.7%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.03e-01 93.9% 49.3%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.34e-01 96.3% 71.9%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.80e-01 100.0% 76.5%
6lbsB01 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.61 51.0 5.19e-01 96.3% 94.9%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.60 42.0 4.18e-01 72.0% 78.8%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.83e-01 98.8% 76.2%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.72e-01 98.8% 71.1%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.60 31.0 3.75e-01 72.0% 81.2%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 53.0 4.86e-01 98.8% 89.6%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.71e-01 96.3% 95.8%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.61e-01 97.6% 77.5%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.86e-01 97.6% 93.4%
4mhgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.67e-01 91.5% 93.3%
3jtgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.52e-01 90.2% 97.6%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 43.0 4.47e-01 84.1% 90.7%
3pqvC01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.54 46.0 3.29e-01 97.6% 96.5%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 42.0 3.44e-01 97.6% 46.1%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.53 43.0 3.66e-01 92.7% 80.7%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 36.0 3.64e-01 81.7% 72.0%
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 3.63e-01 81.7% 78.1%
2py6A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 35.0 2.79e-01 93.9% 32.2%
2r1iA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 34.0 2.99e-01 76.8% 43.8%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 38.0 3.42e-01 78.0% 87.9%
2zzeA04 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.51 36.0 3.48e-01 75.6% 85.3%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 34.0 3.29e-01 82.9% 62.0%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.90 78.0 8.13e-01 95.1% 98.7%
5035043 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.86 75.0 7.83e-01 92.7% 100.0%
3688358 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.86 76.0 7.68e-01 98.8% 96.2%
5029778 101.1.2.43 ↗ alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.85 79.0 7.60e-01 98.8% 88.9%
3883278 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.85 76.0 7.18e-01 100.0% 83.2%
3938377 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.84 77.0 7.60e-01 100.0% 94.1%
4022514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 78.0 6.98e-01 100.0% 79.1%
3729476 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.83 77.0 6.80e-01 100.0% 82.6%
3498779 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.82 76.0 7.53e-01 100.0% 97.6%
3954610 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 68.0 7.09e-01 98.8% 97.3%
4012878 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 76.0 6.71e-01 100.0% 81.7%
3177239 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.82 76.0 6.32e-01 100.0% 80.7%
3480455 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 73.0 7.44e-01 98.8% 100.0%
5036311 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 69.0 6.40e-01 97.6% 86.0%
4976651 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 59.0 6.37e-01 95.1% 98.6%
4955909 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.75 67.0 6.05e-01 97.6% 80.9%
5003874 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 66.0 5.80e-01 97.6% 93.3%
4974161 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 66.0 5.72e-01 97.6% 87.9%
5055466 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 66.0 5.87e-01 97.6% 84.3%
5050129 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 66.0 5.94e-01 97.6% 82.7%
4487383 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 66.0 5.94e-01 98.8% 80.0%
4943364 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 65.0 5.66e-01 97.6% 72.4%
5029327 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 65.0 5.67e-01 97.6% 81.7%
4373647 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 65.0 5.64e-01 96.3% 69.2%
5049515 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 65.0 5.81e-01 98.8% 77.4%
4173782 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 65.0 5.74e-01 97.6% 77.4%
5027116 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 65.0 5.80e-01 98.8% 80.9%
4961270 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 65.0 5.95e-01 98.8% 85.7%
4961841 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 65.0 5.55e-01 98.8% 67.7%
4284507 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 65.0 5.99e-01 98.8% 85.7%
4975513 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 64.0 5.80e-01 97.6% 80.9%
5011183 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 64.0 5.79e-01 97.6% 80.9%
4979490 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 64.0 5.59e-01 97.6% 86.7%
4392375 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 63.0 5.72e-01 97.6% 79.1%
5025840 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 63.0 5.96e-01 98.8% 86.0%
4966192 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 64.0 5.70e-01 98.8% 80.0%
5065786 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 63.0 5.54e-01 97.6% 72.5%
5081950 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 63.0 5.62e-01 97.6% 75.7%
5065308 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 63.0 5.53e-01 97.6% 75.8%
4982781 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 63.0 5.67e-01 97.6% 80.0%
4503351 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 63.0 5.77e-01 97.6% 90.5%
5073929 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 64.0 5.77e-01 98.8% 79.1%
4928669 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 64.0 5.84e-01 97.6% 81.9%
4109840 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 62.0 5.79e-01 96.3% 83.0%
4358890 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 63.0 5.61e-01 98.8% 90.4%
3605279 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 64.0 4.90e-01 98.8% 91.4%
4933997 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 63.0 5.54e-01 98.8% 86.7%
4061942 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 63.0 5.45e-01 98.8% 71.2%
4672256 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 62.0 5.53e-01 97.6% 76.5%
4314672 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 63.0 5.75e-01 97.6% 76.2%
4962870 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 63.0 5.47e-01 98.8% 84.6%
4956520 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 63.0 5.68e-01 98.8% 77.3%
5000349 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 62.0 5.48e-01 98.8% 88.3%
4983039 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 62.0 5.82e-01 97.6% 86.9%
5005295 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 63.0 5.38e-01 98.8% 64.6%
5001284 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.69 57.0 4.63e-01 96.3% 46.9%
3481547 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.69 60.0 4.94e-01 97.6% 62.7%
3642800 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 62.0 5.52e-01 97.6% 74.6%
5052010 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 5.97e-01 97.6% 95.0%
5005164 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 60.0 5.54e-01 97.6% 75.9%
3875839 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 62.0 5.50e-01 97.6% 85.2%
5045315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 58.0 5.16e-01 95.1% 65.2%
3479163 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 62.0 5.24e-01 97.6% 82.3%
5065027 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 54.0 4.53e-01 95.1% 49.7%
2774435 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 62.0 5.65e-01 98.8% 99.0%
3625612 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 60.0 5.62e-01 96.3% 81.0%
5035685 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 59.0 5.19e-01 98.8% 66.1%
3956796 101.1.2.49 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.67 53.0 4.15e-01 96.3% 38.9%
3587894 101.1.2.49 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.67 53.0 4.16e-01 93.9% 40.6%
5051534 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 53.0 4.16e-01 95.1% 39.5%
3927517 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 59.0 5.55e-01 97.6% 82.0%
3988732 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 56.0 5.10e-01 98.8% 70.4%
5065235 101.1.2.738 ↗ alpha arrays › HTH › HTH › winged helix domain › Vir_act_alpha_C 0.66 52.0 4.05e-01 95.1% 38.4%
4944051 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 4.23e-01 97.6% 42.9%
3649376 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 59.0 4.81e-01 97.6% 67.3%
3254841 101.1.2.198 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.66 59.0 5.40e-01 97.6% 81.9%
4978424 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 57.0 5.09e-01 98.8% 67.5%
None — 0.65 59.0 5.50e-01 97.6% 85.0%
3957963 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 48.0 4.63e-01 87.8% 68.4%
4947503 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 4.43e-01 97.6% 48.1%
5014176 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 57.0 4.59e-01 98.8% 50.0%
3280086 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 52.0 4.06e-01 95.1% 40.0%
3163573 101.1.2.52 ↗ alpha arrays › HTH › HTH › winged helix domain › KicB 0.65 57.0 5.09e-01 97.6% 73.0%
5001098 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 50.0 4.89e-01 96.3% 77.8%
5035522 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 55.0 5.09e-01 98.8% 74.3%
4959599 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 56.0 5.08e-01 98.8% 72.8%
5050259 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 54.0 4.23e-01 97.6% 42.2%
4999532 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 55.0 4.03e-01 97.6% 37.9%
5047402 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 56.0 5.11e-01 98.8% 76.4%
4976186 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 53.0 4.41e-01 97.6% 56.1%
3645708 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.62 55.0 4.94e-01 98.8% 97.4%
3960437 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 3.82e-01 84.1% 82.4%
4625648 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 53.0 4.92e-01 98.8% 74.3%
5082386 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 53.0 4.67e-01 98.8% 64.5%
3587826 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 53.0 4.88e-01 98.8% 75.9%
2391543 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 51.0 3.98e-01 100.0% 76.6%
3797700 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.78e-01 98.8% 83.0%
None — 0.57 48.0 4.69e-01 97.6% 86.7%
3242472 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.57 49.0 4.46e-01 100.0% 96.5%
D4 medium residues 192-324
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19263.6 best DUF5906 53.0 7.10e-14 69.9% 85.0%
D5 medium residues 325-409
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.54 37.0 3.21e-01 71.8% 71.7%
6oi7A01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 36.0 2.82e-01 72.9% 92.9%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081314 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.96 91.0 6.12e-01 100.0% 31.9%
5029777 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.96 90.0 6.09e-01 100.0% 32.5%
5035042 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.93 89.0 5.96e-01 100.0% 34.2%
5059005 5068.1.1.0 ↗ alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 0.54 40.0 3.17e-01 78.8% 71.4%
3707191 109.4.1.451 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 0.53 40.0 2.70e-01 81.2% 27.5%
3494025 109.4.1.14 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MyTH4 0.51 41.0 2.99e-01 85.9% 49.6%
3609408 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 38.0 2.33e-01 82.4% 24.2%