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IMGVR_UViG_3300025836_000142-3300025836-Ga0209748_10097103
Arc-VirIMGVR_UViG_3300025836_000142-3300025836-Ga0209748_10097103
Identity
- Kingdom:
- archaea
Quality
91.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-53
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00562.34 best | RNA_pol_Rpb2_6 | 36.2 | 5.60e-09 | 100.0% | 14.2% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfB06 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.83 | 74.0 | 4.81e-01 | 100.0% | 23.3% |
| 2czrA02 | 3.90.79.30 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain | 0.65 | 38.0 | 2.90e-01 | 100.0% | 23.3% |
| 1oeyA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 41.0 | 3.52e-01 | 71.2% | 91.5% |
| 5eriA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 2.81e-01 | 71.2% | 47.7% |
| 2ylmA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 36.0 | 3.02e-01 | 71.2% | 88.7% |
| 2kk8A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 35.0 | 3.24e-01 | 71.2% | 97.3% |
| 3obaA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 40.0 | 2.50e-01 | 86.5% | 71.5% |
| 1qr0A01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.51 | 35.0 | 2.74e-01 | 73.1% | 83.2% |
| 2c43A01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.50 | 34.0 | 2.63e-01 | 73.1% | 69.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3677222 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.86 | 78.0 | 5.50e-01 | 100.0% | 38.0% |
| 4888118 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.84 | 76.0 | 5.27e-01 | 100.0% | 32.5% |
| 3582934 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.83 | 75.0 | 5.97e-01 | 100.0% | 53.0% |
| 4902571 | 1.1.2.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6, RNA_pol_Rpb2_7 | 0.83 | 75.0 | 5.21e-01 | 100.0% | 32.5% |
| 4946077 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.79 | 70.0 | 4.95e-01 | 100.0% | 32.5% |
| 3600872 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.77 | 68.0 | 4.78e-01 | 100.0% | 34.5% |
| 4896460 | 1.1.2.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6, RNA_pol_Rpb2_7 | 0.77 | 68.0 | 5.06e-01 | 100.0% | 46.5% |
| 4118150 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.76 | 66.0 | 4.67e-01 | 100.0% | 33.9% |
| 4896487 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.75 | 66.0 | 4.95e-01 | 100.0% | 46.5% |
| 3591105 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 46.0 | 3.13e-01 | 80.8% | 35.7% |
| 3610777 | 109.4.1.1474 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_16 | 0.60 | 45.0 | 3.07e-01 | 84.6% | 37.1% |
| 5056061 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.60 | 41.0 | 2.68e-01 | 71.2% | 55.1% |
| 3857827 | 109.4.1.2045 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6 | 0.60 | 40.0 | 2.75e-01 | 71.2% | 39.5% |
| 3717943 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.59 | 45.0 | 3.15e-01 | 88.5% | 44.4% |
| 4596350 | 109.4.1.362 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_8 | 0.57 | 40.0 | 2.66e-01 | 75.0% | 35.3% |
| 3346021 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 42.0 | 2.89e-01 | 82.7% | 39.0% |
| 3465508 | 10.12.1.53 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 | 0.55 | 42.0 | 2.97e-01 | 88.5% | 24.3% |
| 5013136 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 42.0 | 2.76e-01 | 90.4% | 45.9% |
| 3680772 | 109.4.1.728 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 40.0 | 2.77e-01 | 84.6% | 40.8% |
| 3434200 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.53 | 39.0 | 4.37e-01 | 100.0% | 100.0% |
| 3634139 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 45.0 | 2.93e-01 | 98.1% | 52.5% |
| 3435470 | 109.4.1.2075 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_2, TPR_19 | 0.53 | 40.0 | 2.70e-01 | 84.6% | 38.7% |
| 4011647 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.52 | 44.0 | 2.87e-01 | 98.1% | 54.1% |
| 3180101 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 43.0 | 2.88e-01 | 96.2% | 47.9% |
| 3175964 | 301.8.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase | 0.52 | 34.0 | 2.76e-01 | 71.2% | 77.5% |
| 3485595 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 42.0 | 2.79e-01 | 94.2% | 74.0% |
| 3623486 | 221.1.1.52 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 | 0.51 | 38.0 | 3.07e-01 | 86.5% | 75.7% |
| 4941783 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.50 | 37.0 | 3.29e-01 | 98.1% | 50.5% |
D2
medium
residues 74-123
Domain cluster:
rep: RNA_polymerase__YP_010085252__Western_grey_kangaroopox_virus__1566307__D1016-1074
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04560.26 best | RNA_pol_Rpb2_7 | 50.6 | 2.90e-13 | 62.0% | 35.6% |
D3
medium
residues 124-188
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04560.26 best | RNA_pol_Rpb2_7 | 42.6 | 9.30e-11 | 95.4% | 60.9% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5w5yB08 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.86 | 77.0 | 5.80e-01 | 96.9% | 66.7% |
| 7ob9B02 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.85 | 64.0 | 5.45e-01 | 80.0% | 54.9% |
| 8c5yA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 45.0 | 3.36e-01 | 75.4% | 65.3% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.58 | 33.0 | 3.17e-01 | 84.6% | 45.0% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.58 | 45.0 | 4.09e-01 | 87.7% | 92.4% |
| 4ioyX02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 34.0 | 2.92e-01 | 86.2% | 33.9% |
| 5teaB00 | 3.90.80.10 | Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase | 0.55 | 42.0 | 3.14e-01 | 84.6% | 47.1% |
| 4b1bA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 39.0 | 2.48e-01 | 92.3% | 75.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4972999 | 4043.1.1.0 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase | 0.99 | 96.0 | 7.51e-01 | 100.0% | 54.2% |
| 5054775 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.98 | 92.0 | 7.23e-01 | 100.0% | 53.3% |
| 4946078 | 4043.1.1.0 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase | 0.97 | 87.0 | 6.95e-01 | 93.8% | 53.0% |
| 5070342 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.96 | 87.0 | 7.63e-01 | 96.9% | 68.9% |
| 3603405 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.95 | 91.0 | 6.86e-01 | 100.0% | 52.6% |
| 1223288 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.94 | 86.0 | 8.78e-01 | 96.9% | 100.0% |
| 3417299 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.92 | 82.0 | 6.35e-01 | 95.4% | 56.2% |
| 3695558 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.90 | 82.0 | 5.99e-01 | 96.9% | 64.5% |
| 3712063 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.89 | 83.0 | 6.36e-01 | 100.0% | 55.6% |
| 1108098 | 4043.1.1.1 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 0.88 | 80.0 | 5.89e-01 | 96.9% | 62.3% |
| 3599423 | 4043.1.1.0 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase | 0.88 | 79.0 | 6.13e-01 | 95.4% | 55.4% |
| 2754226 | 4043.1.1.1 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 0.88 | 79.0 | 6.26e-01 | 95.4% | 51.2% |
| 3925293 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.88 | 82.0 | 6.15e-01 | 100.0% | 58.7% |
| 3182259 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.88 | 81.0 | 5.73e-01 | 98.5% | 70.3% |
| 4818395 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.88 | 75.0 | 6.74e-01 | 90.8% | 74.1% |
| 1879234 | 4043.1.1.0 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase | 0.86 | 77.0 | 6.04e-01 | 96.9% | 50.4% |
| 4932695 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.85 | 74.0 | 5.97e-01 | 100.0% | 51.7% |
| 5059258 | 109.4.1.95 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 | 0.64 | 42.0 | 2.91e-01 | 90.8% | 20.0% |
| 4481690 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.63 | 36.0 | 3.60e-01 | 89.2% | 52.9% |
| 3625928 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.60 | 45.0 | 3.33e-01 | 81.5% | 60.0% |
| 3655803 | 2.1.1.123 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 | 0.60 | 49.0 | 3.47e-01 | 90.8% | 59.6% |
| 315262 | 3433.1.1.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain › ParB | 0.59 | 31.0 | 3.26e-01 | 76.9% | 56.9% |
| 3881976 | 375.1.1.142 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › VCIP135_N | 0.58 | 43.0 | 4.24e-01 | 81.5% | 95.7% |
| 3846046 | 221.1.1.195 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › VCIP135_N | 0.58 | 43.0 | 4.33e-01 | 81.5% | 96.9% |
| 4260092 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.54 | 33.0 | 3.13e-01 | 89.2% | 50.0% |
| 5015962 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.53 | 39.0 | 4.27e-01 | 89.2% | 100.0% |
| 3098015 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.52 | 45.0 | 3.29e-01 | 100.0% | 34.5% |