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IMGVR_UViG_3300025842_000205-3300025842-Ga0210054_10188511

Arc-Vir

IMGVR_UViG_3300025842_000205-3300025842-Ga0210054_10188511

Identity

Kingdom:
archaea

Quality

83.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-56
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.62 47.0 3.40e-01 97.8% 27.2%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.62 49.0 4.43e-01 97.8% 61.8%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 3.18e-01 87.0% 29.8%
4j37A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.59 46.0 3.24e-01 100.0% 23.7%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 40.0 2.84e-01 100.0% 19.8%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.58 46.0 3.01e-01 100.0% 21.2%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 38.0 3.11e-01 100.0% 34.4%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.58 44.0 2.87e-01 91.3% 86.2%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.54 42.0 2.82e-01 100.0% 43.3%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.31e-01 100.0% 36.4%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 43.0 3.14e-01 95.7% 46.1%
1dfaA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 37.0 2.47e-01 80.4% 65.8%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.51 40.0 3.68e-01 93.5% 66.7%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.51 39.0 2.96e-01 100.0% 81.9%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 41.0 3.36e-01 100.0% 87.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943172 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 51.0 4.15e-01 100.0% 38.0%
1936501 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.65 53.0 4.19e-01 100.0% 58.9%
4990006 3355.1.1.14 ↗ alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Lactate_perm 0.63 45.0 2.60e-01 93.5% 7.5%
4808076 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.62 50.0 4.02e-01 100.0% 62.9%
3966825 1.1.13.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.62 49.0 3.73e-01 100.0% 35.8%
3501352 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.59 37.0 3.17e-01 97.8% 34.7%
4600281 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.58 45.0 3.69e-01 100.0% 59.6%
3932950 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 44.0 2.71e-01 97.8% 13.3%
3328712 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.55 43.0 2.85e-01 93.5% 47.0%
3620201 3382.1.1.1 ↗ alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.55 40.0 2.55e-01 87.0% 60.6%
4451235 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.55 39.0 2.54e-01 80.4% 89.8%
4189845 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.53 38.0 2.66e-01 89.1% 54.5%
3264034 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.53 37.0 3.43e-01 97.8% 55.4%
4324097 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.52 40.0 3.42e-01 100.0% 64.0%
5022323 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 43.0 3.95e-01 100.0% 81.5%
4227163 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 40.0 3.35e-01 100.0% 64.0%
3909924 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.51 41.0 3.07e-01 100.0% 65.2%