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IMGVR_UViG_3300025844_000009-3300025844-Ga0210036_1000052153
Arc-VirIMGVR_UViG_3300025844_000009-3300025844-Ga0210036_1000052153
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-108
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23849.3 best | Phage_TTP_2 | 53.1 | 6.10e-14 | 100.0% | 58.2% |
| PF06841.19 | Phage_T4_gp19 | 31.3 | 2.30e-07 | 95.8% | 53.0% |
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.86 | 66.0 | 5.45e-01 | 100.0% | 47.5% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.84 | 67.0 | 5.51e-01 | 100.0% | 49.4% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.80 | 63.0 | 5.35e-01 | 100.0% | 53.1% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.79 | 63.0 | 5.32e-01 | 100.0% | 53.0% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.71 | 42.0 | 4.27e-01 | 97.9% | 58.9% |
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.65 | 49.0 | 4.69e-01 | 96.8% | 68.8% |
| 3drxB03 | 3.30.70.2000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 33.0 | 4.28e-01 | 95.8% | 96.1% |
| 1y9wA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 34.0 | 3.30e-01 | 93.7% | 49.0% |
| 7d58G01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.58 | 42.0 | 4.59e-01 | 97.9% | 94.7% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 33.0 | 3.56e-01 | 98.9% | 65.0% |
| 2oq5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 38.0 | 3.75e-01 | 100.0% | 65.4% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.55 | 40.0 | 4.05e-01 | 100.0% | 76.6% |
| 2cpiA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 36.0 | 3.82e-01 | 100.0% | 80.2% |
| 3girA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.53 | 36.0 | 3.79e-01 | 97.9% | 76.7% |
| 3ayhB01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.53 | 39.0 | 4.18e-01 | 100.0% | 92.4% |
| 2ypyA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.53 | 33.0 | 2.99e-01 | 100.0% | 43.3% |
| 3a8kA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.53 | 36.0 | 3.75e-01 | 97.9% | 76.1% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.53 | 33.0 | 3.02e-01 | 100.0% | 45.0% |
| 1vmbA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 37.0 | 3.63e-01 | 100.0% | 66.4% |
| 1pj5A04 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.52 | 34.0 | 3.19e-01 | 96.8% | 52.5% |
| 1yx2A02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.52 | 35.0 | 3.70e-01 | 97.9% | 76.7% |
| 5dj7A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 34.0 | 3.35e-01 | 98.9% | 58.3% |
| 2g3aA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 31.0 | 3.04e-01 | 92.6% | 51.4% |
| 1v5vA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.52 | 35.0 | 3.62e-01 | 98.9% | 72.8% |
| 2ymaA00 | 3.10.310.60 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.52 | 35.0 | 3.15e-01 | 100.0% | 48.9% |
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 29.0 | 3.34e-01 | 84.2% | 74.0% |
| 4z9eA00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.51 | 32.0 | 3.39e-01 | 92.6% | 70.6% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.51 | 35.0 | 3.48e-01 | 100.0% | 66.3% |
| 4kvxA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 33.0 | 2.84e-01 | 94.7% | 40.8% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2101663 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.89 | 83.0 | 6.74e-01 | 97.9% | 58.3% |
| 5003885 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.89 | 73.0 | 6.21e-01 | 100.0% | 56.6% |
| 3581358 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.88 | 82.0 | 6.82e-01 | 100.0% | 60.6% |
| 4995819 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.88 | 81.0 | 6.80e-01 | 100.0% | 62.0% |
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.85 | 60.0 | 4.21e-01 | 98.9% | 25.6% |
| 3058416 | 1.1.5.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD | 0.85 | 66.0 | 5.91e-01 | 100.0% | 60.6% |
| 4929752 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.85 | 66.0 | 5.53e-01 | 100.0% | 50.3% |
| 2832217 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.84 | 70.0 | 6.00e-01 | 100.0% | 58.5% |
| 136185 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.84 | 67.0 | 5.51e-01 | 100.0% | 49.4% |
| 2471641 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.83 | 69.0 | 5.84e-01 | 100.0% | 56.4% |
| 4995820 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.82 | 75.0 | 6.69e-01 | 100.0% | 72.3% |
| 3969384 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.81 | 67.0 | 5.47e-01 | 100.0% | 51.2% |
| 3023894 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.81 | 68.0 | 5.77e-01 | 98.9% | 57.0% |
| 4982153 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.79 | 66.0 | 4.63e-01 | 100.0% | 31.1% |
| 2471637 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.79 | 64.0 | 5.50e-01 | 100.0% | 55.7% |
| 3966479 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.78 | 67.0 | 5.48e-01 | 100.0% | 52.7% |
| 3942477 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.77 | 66.0 | 5.42e-01 | 100.0% | 53.4% |
| 4140243 | 1.1.5.82 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 | 0.77 | 62.0 | 5.84e-01 | 100.0% | 71.3% |
| 4873215 | 1.1.13.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 | 0.76 | 60.0 | 5.24e-01 | 100.0% | 57.1% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.75 | 64.0 | 5.41e-01 | 100.0% | 57.5% |
| 3096576 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.74 | 65.0 | 5.40e-01 | 100.0% | 56.0% |
| 5004308 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.69 | 62.0 | 5.26e-01 | 100.0% | 60.0% |
| 3590380 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.65 | 59.0 | 4.76e-01 | 100.0% | 55.6% |
| 4050380 | 1.1.7.95 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 | 0.61 | 44.0 | 4.45e-01 | 98.9% | 75.8% |
| 3264346 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.56 | 33.0 | 2.52e-01 | 94.7% | 24.5% |
| 3950877 | 3459.1.1.0 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule | 0.55 | 33.0 | 3.89e-01 | 100.0% | 86.2% |
| 4585125 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.55 | 39.0 | 3.86e-01 | 100.0% | 70.0% |
| 3583042 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.54 | 27.0 | 2.34e-01 | 97.9% | 30.7% |
| 2066755 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.54 | 35.0 | 3.60e-01 | 96.8% | 70.0% |
| 3943244 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 32.0 | 2.84e-01 | 92.6% | 39.1% |
| 1122231 | 304.15.1.4 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain › LANA1_DNA-bd | 0.53 | 33.0 | 3.02e-01 | 100.0% | 45.0% |
| 4401040 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.51 | 27.0 | 2.76e-01 | 90.5% | 50.0% |