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IMGVR_UViG_3300025859_001166-3300025859-Ga0209096_100026127
Arc-VirIMGVR_UViG_3300025859_001166-3300025859-Ga0209096_100026127
Identity
- Kingdom:
- archaea
Quality
94.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-81
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rcmB00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.83 | 75.0 | 5.93e-01 | 98.8% | 86.8% |
| 5dnoA00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.80 | 73.0 | 5.71e-01 | 100.0% | 51.8% |
| 2mtvA00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.80 | 73.0 | 5.78e-01 | 100.0% | 60.3% |
| 4rcjA01 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.79 | 73.0 | 5.88e-01 | 100.0% | 61.6% |
| 1t62B00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.76 | 69.0 | 5.44e-01 | 100.0% | 81.0% |
| 2gksB01 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.70 | 63.0 | 5.22e-01 | 100.0% | 92.2% |
| 2nwaA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.70 | 54.0 | 5.54e-01 | 95.0% | 86.7% |
| 2b78A01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.68 | 49.0 | 5.27e-01 | 95.0% | 92.4% |
| 1vhkA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.67 | 54.0 | 5.60e-01 | 100.0% | 95.9% |
| 2gbsA00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.66 | 60.0 | 4.88e-01 | 100.0% | 61.4% |
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 35.0 | 3.72e-01 | 70.0% | 57.5% |
| 3cr8A01 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.64 | 57.0 | 4.74e-01 | 100.0% | 74.5% |
| 2as0A01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.61 | 45.0 | 4.78e-01 | 95.0% | 91.4% |
| 1q7hA02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.60 | 50.0 | 4.89e-01 | 96.2% | 83.7% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.60 | 52.0 | 4.94e-01 | 93.8% | 90.5% |
| 3bpkA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 54.0 | 4.15e-01 | 100.0% | 75.4% |
| 5zveA02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.59 | 49.0 | 4.81e-01 | 97.5% | 84.9% |
| 3c0kA01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.59 | 44.0 | 4.67e-01 | 96.2% | 91.5% |
| 3zv0C01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.59 | 50.0 | 4.10e-01 | 100.0% | 50.0% |
| 2apoA01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.59 | 50.0 | 4.68e-01 | 100.0% | 76.8% |
| 3wndA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 46.0 | 4.37e-01 | 92.5% | 73.4% |
| 1iq8A04 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.57 | 46.0 | 4.74e-01 | 96.2% | 92.3% |
| 1r5bA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 45.0 | 4.39e-01 | 98.8% | 80.9% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 33.0 | 3.36e-01 | 93.8% | 60.0% |
| 1f8nA01 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.53 | 42.0 | 3.56e-01 | 87.5% | 93.0% |
| 1arbA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 46.0 | 3.91e-01 | 98.8% | 75.9% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 31.0 | 3.44e-01 | 73.8% | 75.0% |
| 1dq3A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.52 | 37.0 | 3.00e-01 | 77.5% | 92.1% |
| 3hl6A01 | 3.30.1300.50 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Putative mobile pathogenicity island, N-terminal domain | 0.50 | 33.0 | 3.41e-01 | 96.2% | 73.0% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999516 | 1.1.9.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE | 0.86 | 81.0 | 6.63e-01 | 100.0% | 64.4% |
| 4961857 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.80 | 73.0 | 5.93e-01 | 100.0% | 62.1% |
| 4632972 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.76 | 58.0 | 6.27e-01 | 96.2% | 95.6% |
| 4930941 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.76 | 68.0 | 5.69e-01 | 100.0% | 67.6% |
| 4582116 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.75 | 55.0 | 6.03e-01 | 98.8% | 95.4% |
| 4974759 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.75 | 68.0 | 4.48e-01 | 100.0% | 30.0% |
| 4361032 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.74 | 56.0 | 5.89e-01 | 96.2% | 91.4% |
| 4961858 | 1.1.9.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE | 0.73 | 67.0 | 5.36e-01 | 100.0% | 60.7% |
| 4480273 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.72 | 53.0 | 5.71e-01 | 96.2% | 95.4% |
| 4139909 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.72 | 50.0 | 5.51e-01 | 96.2% | 90.6% |
| 3418432 | 1.1.9.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE | 0.72 | 66.0 | 6.00e-01 | 100.0% | 86.7% |
| 4370928 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.72 | 50.0 | 5.44e-01 | 96.2% | 90.6% |
| 4048693 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.71 | 52.0 | 5.56e-01 | 98.8% | 88.6% |
| 3818610 | 4.1.1.324 ↗ | beta barrels › SH3 › SH3 › SH3 › Nodulin_C | 0.69 | 46.0 | 4.36e-01 | 72.5% | 58.1% |
| 4362623 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.69 | 48.0 | 5.23e-01 | 96.2% | 90.6% |
| 4589682 | 1.1.9.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 | 0.69 | 61.0 | 4.85e-01 | 98.8% | 83.1% |
| 4959440 | 1.1.9.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 | 0.68 | 59.0 | 4.70e-01 | 98.8% | 78.8% |
| 186 | 1.1.9.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 | 0.68 | 49.0 | 5.22e-01 | 95.0% | 89.7% |
| 4072524 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.67 | 56.0 | 5.05e-01 | 98.8% | 66.4% |
| 3603793 | 1.1.9.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 | 0.66 | 49.0 | 5.23e-01 | 95.0% | 90.0% |
| 3604672 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.65 | 48.0 | 4.62e-01 | 81.2% | 100.0% |
| 3600186 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.64 | 53.0 | 5.02e-01 | 100.0% | 75.8% |
| 4266069 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.63 | 56.0 | 5.12e-01 | 98.8% | 89.5% |
| 3971620 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.62 | 56.0 | 4.51e-01 | 98.8% | 60.7% |
| 3967199 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 55.0 | 5.05e-01 | 98.8% | 81.0% |
| 3253267 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 41.0 | 4.03e-01 | 72.5% | 63.5% |
| 3266454 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.61 | 45.0 | 4.81e-01 | 93.8% | 95.4% |
| 4952429 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.61 | 51.0 | 4.77e-01 | 92.5% | 97.0% |
| 4995416 | 1.1.9.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 | 0.61 | 47.0 | 4.86e-01 | 97.5% | 89.3% |
| 4963284 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.61 | 48.0 | 4.93e-01 | 98.8% | 91.9% |
| 3222051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 36.0 | 3.92e-01 | 92.5% | 72.3% |
| 4956000 | 1.1.9.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 | 0.59 | 44.0 | 4.62e-01 | 95.0% | 91.4% |
| 5051591 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.58 | 48.0 | 4.86e-01 | 97.5% | 91.3% |
| 2834726 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.58 | 50.0 | 4.23e-01 | 98.8% | 56.7% |
| 4317035 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 36.0 | 3.58e-01 | 93.8% | 58.8% |
| 4971606 | 1.1.9.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 | 0.57 | 47.0 | 4.58e-01 | 98.8% | 82.2% |
| 4050976 | 1.1.9.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0179 | 0.57 | 43.0 | 4.42e-01 | 78.8% | 98.7% |
| 3175733 | 1.1.9.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF26292 | 0.57 | 49.0 | 4.81e-01 | 97.5% | 92.9% |
| 3627759 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.56 | 42.0 | 2.64e-01 | 78.8% | 23.7% |
| 3178567 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 47.0 | 4.37e-01 | 96.2% | 80.0% |
| 4952573 | 1.1.13.74 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › UPF0179 | 0.54 | 41.0 | 4.23e-01 | 80.0% | 100.0% |
| 5036886 | 1.1.13.74 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › UPF0179 | 0.54 | 39.0 | 4.04e-01 | 77.5% | 94.7% |
| 4945724 | 1.1.9.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0179 | 0.53 | 40.0 | 4.12e-01 | 81.2% | 96.0% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.51 | 38.0 | 3.90e-01 | 77.5% | 97.3% |
D2
high
residues 85-137
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xjuA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.57 | 49.0 | 3.56e-01 | 100.0% | 60.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3746144 | 192.29.1.273 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › NICE-3 | 0.53 | 45.0 | 4.23e-01 | 94.3% | 92.3% |
| 3640550 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.53 | 47.0 | 3.80e-01 | 100.0% | 55.0% |