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IMGVR_UViG_3300025877_000037-3300025877-Ga0208460_100010822

Arc-Vir

IMGVR_UViG_3300025877_000037-3300025877-Ga0208460_100010822

Quality

75.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-81
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p61A00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.88 63.0 5.44e-01 74.4% 50.9%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.85 64.0 5.51e-01 78.2% 52.6%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.85 68.0 4.78e-01 84.6% 49.1%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 65.0 6.78e-01 84.6% 95.8%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.81 66.0 4.99e-01 88.5% 38.9%
4a17U01 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 62.0 6.27e-01 84.6% 84.4%
1i4dA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.78 61.0 4.58e-01 84.6% 66.5%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.78 53.0 5.72e-01 74.4% 84.6%
1zoyD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.76 55.0 5.05e-01 80.8% 58.8%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.76 58.0 6.17e-01 80.8% 95.5%
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.75 63.0 5.16e-01 93.6% 50.3%
6qs7C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 52.0 4.36e-01 73.1% 69.7%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 67.0 4.71e-01 98.7% 35.0%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 58.0 5.95e-01 84.6% 90.7%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.74 55.0 4.68e-01 87.2% 48.8%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.74 61.0 5.56e-01 89.7% 69.9%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.74 64.0 4.24e-01 98.7% 26.5%
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.73 60.0 5.43e-01 88.5% 69.2%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.72 54.0 5.13e-01 78.2% 73.6%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.72 58.0 4.88e-01 93.6% 52.3%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.72 61.0 5.81e-01 92.3% 85.6%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.71 59.0 5.35e-01 91.0% 93.4%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 53.0 5.65e-01 80.8% 95.5%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.70 48.0 3.81e-01 70.5% 37.2%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.70 54.0 5.66e-01 84.6% 91.5%
1luwA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.69 50.0 5.45e-01 76.9% 100.0%
6xj1A01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.69 58.0 4.14e-01 94.9% 49.0%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.69 56.0 5.63e-01 85.9% 91.0%
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.69 47.0 4.13e-01 70.5% 47.8%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 54.0 5.46e-01 85.9% 87.0%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.68 58.0 4.90e-01 94.9% 56.4%
5xtck00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 52.0 4.88e-01 84.6% 72.2%
1qu7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.66 58.0 4.18e-01 97.4% 40.5%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 50.0 4.09e-01 83.3% 76.0%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.65 54.0 5.10e-01 94.9% 100.0%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 53.0 4.62e-01 93.6% 58.5%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 44.0 4.57e-01 85.9% 90.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3770 601.29.1.1 alpha bundles › Four-helical up-and-down bundle › TM1646-like › TM1646-like › DUF327 0.88 63.0 5.46e-01 74.4% 51.3%
3878643 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.84 64.0 6.19e-01 83.3% 72.9%
3916403 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.84 63.0 6.18e-01 83.3% 72.9%
4201121 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.83 61.0 6.85e-01 79.5% 98.3%
5032752 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.83 60.0 5.80e-01 76.9% 68.2%
3655628 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.83 68.0 4.74e-01 87.2% 47.2%
4784164 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.83 65.0 6.83e-01 82.1% 92.9%
3389617 174.1.1.29 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4728 0.83 66.0 5.46e-01 85.9% 50.8%
3228061 1147.1.1.1 alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL 0.82 65.0 5.35e-01 82.1% 50.0%
3488077 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.82 63.0 5.85e-01 80.8% 70.5%
3503444 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.82 67.0 6.39e-01 88.5% 75.6%
3883526 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.80 74.0 4.84e-01 100.0% 40.1%
3667622 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.80 62.0 5.93e-01 82.1% 71.1%
4798159 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.80 66.0 6.77e-01 88.5% 90.8%
3574188 601.33.1.8 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Frag1 0.80 64.0 5.17e-01 85.9% 46.9%
3497251 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.80 60.0 6.02e-01 82.1% 77.5%
3612915 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.80 67.0 6.01e-01 91.0% 66.7%
4943592 605.1.1.353 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HATPase_c 0.79 61.0 5.93e-01 83.3% 75.3%
3231580 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.79 72.0 4.91e-01 98.7% 32.0%
5010044 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.78 57.0 5.36e-01 76.9% 63.2%
5002089 2004.1.1.144 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2 0.77 57.0 3.69e-01 76.9% 19.0%
5008319 605.1.1.10 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › SPOB_a 0.77 58.0 6.32e-01 80.8% 98.5%
3239791 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.77 69.0 5.25e-01 100.0% 43.3%
4784166 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.77 61.0 6.41e-01 87.2% 94.3%
315449 192.8.1.2 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Hanta_nucleocap 0.77 64.0 6.53e-01 89.7% 93.4%
3674655 2003.1.9.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins 0.76 59.0 3.48e-01 82.1% 11.2%
5006528 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.76 57.0 5.87e-01 79.5% 84.0%
3486385 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.76 66.0 5.96e-01 94.9% 69.5%
5039785 632.22.1.200 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PF26119 0.76 57.0 5.31e-01 78.2% 67.0%
4946791 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 58.0 5.89e-01 84.6% 85.3%
3240929 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.75 66.0 4.70e-01 94.9% 34.4%
3677690 109.4.1.162 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.75 64.0 3.42e-01 93.6% 9.8%
3581554 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.74 63.0 4.45e-01 91.0% 62.2%
3744077 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.74 65.0 4.46e-01 94.9% 30.2%
3901696 192.8.1.240 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › HR1 0.74 54.0 5.29e-01 82.1% 70.6%
4384750 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.74 64.0 5.99e-01 94.9% 83.2%
4100508 3843.1.1.4 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB 0.73 57.0 4.88e-01 84.6% 53.3%
3215082 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.73 67.0 5.54e-01 100.0% 60.0%
5032963 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.73 58.0 4.50e-01 83.3% 41.2%
5064482 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 66.0 5.06e-01 97.4% 46.7%
3853063 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.71 64.0 5.51e-01 98.7% 67.5%
4018104 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.71 63.0 4.19e-01 96.2% 51.5%
3460130 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.71 53.0 5.30e-01 80.8% 76.2%
3786359 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.71 63.0 5.82e-01 98.7% 79.0%
3577239 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.71 59.0 4.12e-01 91.0% 29.2%
5069780 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.70 60.0 5.71e-01 97.4% 96.8%
3494796 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.70 61.0 4.25e-01 100.0% 54.4%
3750176 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.69 61.0 4.25e-01 98.7% 32.9%
4984355 3843.1.1.1 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 0.69 59.0 5.46e-01 93.6% 83.8%
5054469 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.69 57.0 5.18e-01 91.0% 89.5%
3213957 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.68 61.0 4.72e-01 98.7% 45.3%
3271624 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.68 61.0 3.80e-01 100.0% 31.3%
4969096 3926.1.1.0 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D 0.68 59.0 4.16e-01 98.7% 89.6%
3621149 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.66 58.0 4.25e-01 100.0% 35.6%
4051951 605.2.1.0 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 0.66 54.0 5.23e-01 93.6% 78.9%
5073085 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 54.0 4.22e-01 93.6% 42.7%
4386662 3291.1.1.158 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Seryl_tRNA_N 0.65 55.0 4.87e-01 96.2% 64.3%
4652719 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.64 55.0 5.18e-01 98.7% 78.9%