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IMGVR_UViG_3300025877_000037-3300025877-Ga0208460_100010826
Arc-VirIMGVR_UViG_3300025877_000037-3300025877-Ga0208460_100010826
Identity
- Kingdom:
- archaea
Quality
87.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 56-166
Domain cluster:
rep: MN988468.1__QIG67268.1__EVB37_032__00031__D270-362
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21916.2 best | mtd_2nd | 28.8 | 1.90e-06 | 95.5% | 75.4% |
CATH (2)
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1481665 | 382.1.1.7 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type | 0.55 | 32.0 | 3.96e-01 | 91.0% | 97.0% |
| 4136024 | 382.1.1.7 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type | 0.55 | 33.0 | 3.86e-01 | 91.0% | 89.0% |
| 4134175 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 40.0 | 4.20e-01 | 93.7% | 91.0% |
D2
high
residues 172-203_217-254
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vm9A02 | 2.60.40.2080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.73 | 65.0 | 5.84e-01 | 100.0% | 93.9% |
| 3wmqA00 | 2.60.40.2080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.72 | 63.0 | 5.76e-01 | 98.6% | 92.6% |
| 4mtmA01 | 2.60.40.3940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.69 | 62.0 | 5.59e-01 | 100.0% | 81.2% |
| 6cl5A01 | 2.60.40.3940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 60.0 | 5.25e-01 | 98.6% | 82.4% |
| 2ccvA00 | 2.60.40.2080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 58.0 | 5.25e-01 | 100.0% | 98.0% |
| 5vqfD01 | 2.60.120.970 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 55.0 | 3.95e-01 | 100.0% | 65.9% |
| 7nitA06 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 52.0 | 4.00e-01 | 100.0% | 95.3% |
| 4k7jA02 | 2.60.120.1360 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 52.0 | 4.42e-01 | 100.0% | 97.6% |
| 4i0kA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 4.12e-01 | 90.0% | 78.1% |
| 2wmpB00 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.57 | 48.0 | 4.14e-01 | 100.0% | 98.4% |
| 3a3jA02 | 2.60.410.10 | Mainly Beta › Sandwich › Peptidoglycan synthesis regulatory factor (PBP3), Domain 2 › D-Ala-D-Ala carboxypeptidase, C-terminal domain | 0.57 | 39.0 | 3.66e-01 | 72.9% | 80.4% |
| 1pgsA01 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 47.0 | 3.98e-01 | 100.0% | 98.5% |
| 1opoC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 49.0 | 3.79e-01 | 100.0% | 90.3% |
| 2vo8A00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 48.0 | 3.95e-01 | 100.0% | 58.5% |
| 1wzlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 48.0 | 4.05e-01 | 100.0% | 73.6% |
| 2ystA01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.54 | 44.0 | 3.93e-01 | 95.7% | 76.2% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 41.0 | 3.42e-01 | 90.0% | 97.3% |
| 5afoA01 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.53 | 45.0 | 3.58e-01 | 100.0% | 87.5% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 47.0 | 4.35e-01 | 100.0% | 87.5% |
| 3iabB01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.53 | 37.0 | 3.28e-01 | 72.9% | 62.6% |
| 4wqmA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 46.0 | 4.16e-01 | 100.0% | 93.9% |
| 2xq0A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.52 | 45.0 | 3.39e-01 | 100.0% | 40.2% |
| 3ww3A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 45.0 | 3.12e-01 | 100.0% | 48.3% |
| 3wjcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 36.0 | 2.88e-01 | 75.7% | 47.1% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4064076 | 4182.1.1.0 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like | 0.82 | 75.0 | 7.02e-01 | 100.0% | 98.8% |
| 4936902 | 4182.1.1.0 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like | 0.73 | 66.0 | 6.35e-01 | 100.0% | 100.0% |
| 1489395 | 4182.1.1.2 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin | 0.72 | 64.0 | 5.78e-01 | 98.6% | 92.6% |
| 4927726 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.70 | 62.0 | 4.70e-01 | 100.0% | 82.4% |
| 5081149 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.69 | 60.0 | 6.08e-01 | 95.7% | 100.0% |
| 3978478 | 4182.1.1.3 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C | 0.66 | 57.0 | 4.74e-01 | 97.1% | 62.9% |
| 3253503 | 4182.1.1.2 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin | 0.65 | 56.0 | 5.13e-01 | 100.0% | 94.7% |
| 3741774 | 5046.1.1.0 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b | 0.63 | 56.0 | 5.04e-01 | 100.0% | 93.7% |
| 4162574 | 10.32.1.238 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29980 | 0.60 | 51.0 | 4.23e-01 | 98.6% | 90.0% |
| 5005058 | 4081.1.1.12 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 | 0.59 | 51.0 | 3.78e-01 | 100.0% | 85.1% |
| 4816119 | 12.1.1.25 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Fucosidase_C | 0.57 | 50.0 | 4.34e-01 | 100.0% | 67.3% |
| 3456242 | 10.1.1.12 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C | 0.57 | 47.0 | 3.54e-01 | 100.0% | 70.1% |
| 4954333 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 43.0 | 4.14e-01 | 88.6% | 71.8% |
| 2859191 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.56 | 48.0 | 3.60e-01 | 100.0% | 48.1% |
| 4929038 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 40.0 | 3.96e-01 | 88.6% | 73.3% |
| 1885 | 11.1.5.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Cohesin | 0.55 | 48.0 | 3.95e-01 | 100.0% | 58.5% |
| 3924186 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 3.95e-01 | 90.0% | 63.8% |
| 3217546 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.54 | 46.0 | 4.04e-01 | 100.0% | 96.5% |
| 3250212 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.54 | 47.0 | 3.85e-01 | 100.0% | 58.5% |
| 3596000 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 3.99e-01 | 100.0% | 75.7% |
| 3388564 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.54 | 46.0 | 3.60e-01 | 100.0% | 98.2% |
| 5036977 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.54 | 46.0 | 3.51e-01 | 100.0% | 39.4% |
| 5025771 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 43.0 | 3.94e-01 | 91.4% | 89.5% |
| 3566852 | 11.1.1.891 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26189 | 0.53 | 44.0 | 3.84e-01 | 94.3% | 80.0% |
| 5019984 | 12.1.1.114 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 | 0.53 | 45.0 | 4.09e-01 | 97.1% | 91.6% |
| 3914464 | 11.1.1.562 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BTBD16_C | 0.52 | 44.0 | 3.64e-01 | 100.0% | 90.7% |
| 3591504 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 4.04e-01 | 100.0% | 82.1% |
| 5024617 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.52 | 44.0 | 4.09e-01 | 100.0% | 95.8% |
| 3762480 | 11.1.5.83 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › BTBD16_C | 0.52 | 42.0 | 3.57e-01 | 95.7% | 97.7% |
| 3504294 | 1.1.7.27 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905 | 0.51 | 40.0 | 3.82e-01 | 91.4% | 98.9% |
| 3255936 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 43.0 | 3.85e-01 | 98.6% | 84.8% |
| 3962989 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.51 | 34.0 | 3.15e-01 | 70.0% | 61.0% |
| 3513770 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.51 | 42.0 | 2.91e-01 | 100.0% | 72.8% |
| 5026284 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.51 | 44.0 | 4.07e-01 | 100.0% | 92.6% |
| 3259123 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 43.0 | 3.79e-01 | 100.0% | 87.8% |
| 3961820 | 10.20.1.2 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N | 0.51 | 42.0 | 3.78e-01 | 100.0% | 71.8% |
| 3925906 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.49e-01 | 97.1% | 76.3% |
| 4937225 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.50 | 39.0 | 3.18e-01 | 90.0% | 72.9% |