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IMGVR_UViG_3300025890_004107-3300025890-Ga0209631_100274983

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300025890_004107-3300025890-Ga0209631_100274983 ↗
Kingdom:: archaea

Quality

89.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-68

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01844.30 best	HNH	22.8	1.10e-04	70.3%	89.4%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5inhA04	3.40.570.10	Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A	0.61	48.0	3.11e-01	87.5%	43.3%
1m08A00	3.90.540.10	Alpha Beta › Alpha-Beta Complex › Colicin E7 immunity protein; Chain B, fragment: Endonuclease domain › Colicin/pyocin, DNase domain	0.57	50.0	3.85e-01	93.8%	59.5%
3omlA03	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.51	38.0	2.68e-01	85.9%	69.9%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4986026	378.1.1.2 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH	0.85	55.0	3.86e-01	78.1%	23.2%
3434619	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.81	57.0	4.62e-01	75.0%	41.6%
3278018	378.1.1.2 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH	0.81	63.0	6.75e-01	85.9%	94.5%
3412005	378.1.1.0 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases	0.81	59.0	4.45e-01	78.1%	35.0%
3257037	378.1.1.0 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases	0.80	54.0	4.37e-01	70.3%	38.1%
3914801	378.1.1.0 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases	0.80	59.0	4.65e-01	79.7%	40.0%
5082962	378.1.1.0 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases	0.79	63.0	5.21e-01	90.6%	50.0%
5059323	378.1.1.2 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH	0.78	69.0	5.19e-01	96.9%	66.7%
3210225	378.1.1.9 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2	0.78	65.0	5.23e-01	90.6%	49.2%
3721920	378.1.1.0 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases	0.78	58.0	3.70e-01	78.1%	21.5%
5049537	378.1.1.2 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH	0.77	62.0	5.40e-01	90.6%	58.5%
5081423	378.1.1.3 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_7	0.76	56.0	5.40e-01	100.0%	68.9%
4946236	378.1.1.0 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases	0.74	59.0	4.44e-01	87.5%	46.9%
3952776	377.1.1.88 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH	0.74	60.0	5.98e-01	90.6%	84.6%
3196822	378.1.1.0 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases	0.70	56.0	4.10e-01	89.1%	49.4%
4313114	378.1.1.30 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF30178	0.69	55.0	4.43e-01	85.9%	45.8%
3269193	378.1.1.0 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases	0.66	58.0	4.49e-01	100.0%	45.2%
5045676	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.51	31.0	3.04e-01	75.0%	52.0%

D2 high residues 94-159

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cesA03	1.10.10.1800	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA	0.53	40.0	3.52e-01	78.8%	65.2%
1gh6A01	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.51	31.0	2.69e-01	75.8%	39.6%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3404898	148.1.1.0 ↗	alpha arrays › Histone-like › Histone-related › Histone	0.62	37.0	3.25e-01	71.2%	37.9%
3574711	304.28.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain	0.62	39.0	2.90e-01	78.8%	24.7%
4012268	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.53	41.0	2.87e-01	83.3%	57.2%
2770711	376.1.3.8 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H	0.53	41.0	3.74e-01	87.9%	90.2%
5076912	304.4.1.3 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII	0.50	42.0	4.03e-01	89.4%	100.0%