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IMGVR_UViG_3300025892_000353-3300025892-Ga0209630_100035901

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300025892_000353-3300025892-Ga0209630_100035901 ↗
Kingdom:: archaea

Quality

91.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-85_123-228

PDB

Domain cluster: rep: MG450654.1__ATW62800.1__SCBWM1_gp116__00117__D106-271_373-422_434-472

D2 medium residues 86-122_229-247

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5ngyA01	2.10.270.10	Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding	0.69	40.0	3.23e-01	100.0%	30.8%
1xdiA02	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.63	34.0	2.68e-01	98.2%	24.4%
3qwuA02	3.30.470.30	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme	0.55	46.0	3.28e-01	94.6%	54.4%
3d6wB02	2.20.25.10	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.55	35.0	4.00e-01	100.0%	94.9%
3le4A00	2.20.70.10	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.54	38.0	3.91e-01	98.2%	76.4%
2vugA03	3.30.470.30	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme	0.54	46.0	3.85e-01	98.2%	96.1%
5d1kB01	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.54	44.0	4.00e-01	91.1%	71.4%
3qdrB00	2.30.30.970	Mainly Beta › Roll › SH3 type barrels. ›	0.52	32.0	3.40e-01	98.2%	71.4%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4031064	4999.1.1.0 ↗	beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like	0.63	40.0	4.11e-01	87.5%	67.3%
5052895	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.63	34.0	3.43e-01	100.0%	52.7%
4453816	1.1.5.33 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2	0.59	40.0	2.51e-01	91.1%	13.4%
4833642	4.1.1.33 ↗	beta barrels › SH3 › SH3 › SH3 › Myosin_N	0.58	32.0	3.55e-01	98.2%	66.7%
4973029	4.8.1.0 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like	0.58	38.0	4.31e-01	94.6%	95.0%
4032017	2004.1.1.301 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27	0.57	40.0	2.26e-01	100.0%	6.8%
3991341	5.1.4.304 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd	0.57	41.0	2.33e-01	76.8%	35.1%
5055079	56.2.1.1 ↗	beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT	0.57	39.0	3.82e-01	100.0%	66.7%
4870527	3209.1.1.1 ↗	a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e	0.56	42.0	3.44e-01	100.0%	43.3%
3176528	3922.1.1.157 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › WSD	0.53	39.0	2.68e-01	100.0%	22.6%
3409038	7575.1.1.1 ↗	a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14	0.53	46.0	3.00e-01	100.0%	50.6%
4998265	2006.1.4.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like	0.51	44.0	3.10e-01	94.6%	93.5%
4949048	223.1.1.171 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_3-Cache_2	0.50	42.0	3.26e-01	100.0%	82.1%