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IMGVR_UViG_3300025894_000178-3300025894-Ga0209335_1000479211
Arc-VirIMGVR_UViG_3300025894_000178-3300025894-Ga0209335_1000479211
Identity
- Kingdom:
- archaea
Quality
71.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-59_162-196
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l3nA00 | 1.10.1050.20 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › | 0.68 | 34.0 | 3.28e-01 | 97.8% | 41.3% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.63 | 43.0 | 4.45e-01 | 95.6% | 75.3% |
| 3pfoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 54.0 | 4.80e-01 | 93.4% | 84.4% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.58 | 39.0 | 3.82e-01 | 93.4% | 63.6% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.58 | 42.0 | 4.34e-01 | 100.0% | 82.6% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 40.0 | 4.20e-01 | 100.0% | 82.7% |
| 3b0bB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.55 | 45.0 | 4.44e-01 | 100.0% | 82.5% |
| 3kezA03 | 1.25.40.900 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 31.0 | 2.88e-01 | 100.0% | 41.9% |
| 4g80T00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.55 | 41.0 | 3.55e-01 | 79.1% | 70.5% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.55 | 38.0 | 3.77e-01 | 82.4% | 68.0% |
| 2pz9A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 39.0 | 3.21e-01 | 76.9% | 73.2% |
| 3lfuA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 35.0 | 3.87e-01 | 100.0% | 85.7% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.53 | 39.0 | 3.39e-01 | 78.0% | 55.6% |
| 2b61A02 | 1.10.1740.110 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.53 | 36.0 | 3.47e-01 | 70.3% | 62.5% |
| 2jnsA01 | 1.20.1270.220 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 36.0 | 3.76e-01 | 96.7% | 80.2% |
| 3aqbB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 46.0 | 3.13e-01 | 100.0% | 58.9% |
| 3ctwB00 | 1.10.8.930 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465 | 0.50 | 40.0 | 3.62e-01 | 89.0% | 63.3% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.50 | 39.0 | 3.67e-01 | 81.3% | 73.4% |
| 2wauA02 | 1.20.58.830 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 34.0 | 3.12e-01 | 70.3% | 77.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3229657 | 148.1.3.27 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_10 | 0.62 | 41.0 | 4.29e-01 | 94.5% | 76.2% |
| 3407936 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.59 | 39.0 | 3.54e-01 | 100.0% | 48.8% |
| 3686012 | 3722.1.1.0 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain | 0.59 | 40.0 | 3.06e-01 | 70.3% | 59.5% |
| 3598078 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.59 | 39.0 | 3.78e-01 | 71.4% | 60.0% |
| 4050561 | 323.1.1.7 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase | 0.57 | 44.0 | 3.22e-01 | 84.6% | 87.1% |
| 3982976 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.54 | 47.0 | 4.19e-01 | 95.6% | 93.1% |
| 5018613 | 5051.1.1.5 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Na_Ala_symp | 0.54 | 43.0 | 2.76e-01 | 85.7% | 53.6% |
| 3410965 | 3226.1.1.2 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp | 0.52 | 46.0 | 2.97e-01 | 100.0% | 63.5% |
| 3405478 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.52 | 40.0 | 3.47e-01 | 81.3% | 84.4% |
D2
high
residues 62-157
Domain cluster:
rep: IMGVR_UViG_3300025691_000011-3300025691-Ga0208826_100049817__D46-166
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.63 | 30.0 | 3.70e-01 | 100.0% | 72.4% |
| 2qf4A01 | 2.40.10.340 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 | 0.63 | 44.0 | 4.81e-01 | 100.0% | 89.9% |
| 6vudA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.61 | 38.0 | 4.25e-01 | 86.5% | 81.3% |
| 2w5eA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 36.0 | 4.01e-01 | 90.6% | 81.1% |
| 3a35A02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 45.0 | 4.63e-01 | 100.0% | 88.0% |
| 1s2oA02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.56 | 34.0 | 3.84e-01 | 82.3% | 81.7% |
| 5tr9A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 48.0 | 4.83e-01 | 100.0% | 95.8% |
| 2dt9A01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 40.0 | 4.39e-01 | 94.8% | 98.6% |
| 3d31A03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 30.0 | 3.33e-01 | 96.9% | 67.6% |
| 3onqA02 | 3.30.70.2730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 35.0 | 3.71e-01 | 83.3% | 77.8% |
| 3u28C00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.53 | 42.0 | 4.34e-01 | 100.0% | 90.2% |
| 1qexA03 | 2.60.40.1680 | Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like | 0.53 | 46.0 | 4.39e-01 | 99.0% | 94.7% |
| 3il4A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 37.0 | 3.31e-01 | 72.9% | 97.3% |
| 3bpsA02 | 2.60.120.690 | Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 | 0.53 | 38.0 | 3.36e-01 | 100.0% | 48.7% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 28.0 | 3.37e-01 | 95.8% | 76.6% |
| 2xdhA00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 37.0 | 3.37e-01 | 99.0% | 52.2% |
| 1v1pB02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 28.0 | 3.15e-01 | 96.9% | 66.2% |
| 2wiqA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 42.0 | 3.26e-01 | 89.6% | 88.0% |
| 1qnaA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.52 | 44.0 | 4.47e-01 | 92.7% | 95.7% |
| 3v10A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.77e-01 | 100.0% | 61.6% |
| 2wmfA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.51 | 35.0 | 3.25e-01 | 94.8% | 54.0% |
| 2ww8A02 | 2.60.40.2110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 3.59e-01 | 100.0% | 53.5% |
| 3irpX02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 43.0 | 3.80e-01 | 100.0% | 63.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4926929 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 30.0 | 3.79e-01 | 97.9% | 78.2% |
| 3971226 | 10.12.1.126 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF28724 | 0.61 | 36.0 | 2.99e-01 | 99.0% | 32.0% |
| 4393143 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 40.0 | 4.57e-01 | 93.8% | 94.3% |
| 5044775 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.60 | 41.0 | 4.06e-01 | 100.0% | 64.8% |
| 4000793 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 50.0 | 4.84e-01 | 97.9% | 83.6% |
| 5083772 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.58 | 50.0 | 4.41e-01 | 94.8% | 67.1% |
| 5019196 | 12.1.1.120 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › PF27849 | 0.58 | 48.0 | 4.56e-01 | 94.8% | 76.5% |
| 5046975 | 1.1.7.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C | 0.57 | 43.0 | 4.57e-01 | 100.0% | 95.0% |
| 4518787 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.57 | 42.0 | 4.66e-01 | 96.9% | 100.0% |
| 3875549 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.57 | 49.0 | 4.01e-01 | 99.0% | 52.8% |
| 3962617 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.56 | 49.0 | 3.91e-01 | 100.0% | 49.8% |
| 3252861 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.56 | 48.0 | 3.84e-01 | 100.0% | 47.9% |
| 3389361 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 46.0 | 4.63e-01 | 100.0% | 91.6% |
| 5038375 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.56 | 49.0 | 3.91e-01 | 100.0% | 50.5% |
| 3989692 | 4081.1.1.12 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 | 0.55 | 38.0 | 3.05e-01 | 100.0% | 33.3% |
| 3267853 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.54 | 47.0 | 3.68e-01 | 100.0% | 46.4% |
| 2390432 | 10.47.1.1 ↗ | beta sandwiches › jelly-roll › TssK C-terminal domain › TssK C-terminal domain › T6SS_VasE | 0.53 | 45.0 | 4.11e-01 | 94.8% | 80.3% |
| 5028300 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.53 | 35.0 | 3.71e-01 | 87.5% | 76.5% |
| 2512673 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 46.0 | 4.24e-01 | 100.0% | 84.9% |
| 3277271 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 3.85e-01 | 100.0% | 72.7% |
| 5003891 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.52 | 40.0 | 3.39e-01 | 100.0% | 48.2% |
| 3603717 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.52 | 36.0 | 3.88e-01 | 89.6% | 87.5% |
| 4291120 | 10.21.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 | 0.51 | 44.0 | 4.04e-01 | 100.0% | 91.9% |
| 5027689 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 35.0 | 3.77e-01 | 88.5% | 86.3% |
| 4132820 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.51 | 44.0 | 4.36e-01 | 100.0% | 91.4% |
| 4938255 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.50 | 33.0 | 3.58e-01 | 88.5% | 81.2% |
| 4960956 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.50 | 40.0 | 3.42e-01 | 100.0% | 52.5% |
| 4122798 | 242.1.1.6 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA | 0.50 | 38.0 | 3.78e-01 | 96.9% | 76.2% |
| 3547860 | 10.21.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 | 0.50 | 44.0 | 4.01e-01 | 100.0% | 92.3% |