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IMGVR_UViG_3300025894_000178-3300025894-Ga0209335_100047927
Arc-VirIMGVR_UViG_3300025894_000178-3300025894-Ga0209335_100047927
Identity
- Kingdom:
- archaea
Quality
62.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 328-386
D2
high
residues 528-609
Domain cluster:
rep: IMGVR_UViG_3300010235_000004-3300010235-Ga0136247_100002931__D99-185
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13884.12 best | Peptidase_S74 | 46.7 | 4.20e-12 | 52.4% | 74.1% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 68.0 | 5.39e-01 | 96.3% | 82.0% |
| 1qlbA04 | 3.10.20.820 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 33.0 | 3.22e-01 | 91.5% | 45.7% |
| 1g8xA06 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 49.0 | 3.28e-01 | 95.1% | 23.2% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 51.0 | 4.49e-01 | 100.0% | 89.2% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 31.0 | 2.27e-01 | 90.2% | 21.4% |
| 5fl7G02 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.53 | 48.0 | 3.59e-01 | 100.0% | 91.1% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.53 | 42.0 | 2.55e-01 | 89.0% | 83.7% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 31.0 | 3.54e-01 | 79.3% | 81.4% |
| 4yisB02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 38.0 | 3.32e-01 | 81.7% | 58.1% |
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.51 | 37.0 | 3.42e-01 | 78.0% | 82.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3252576 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.91 | 87.0 | 6.95e-01 | 100.0% | 69.0% |
| 3563383 | 3240.1.1.2 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA | 0.91 | 87.0 | 6.78e-01 | 100.0% | 63.2% |
| 3225281 | 3240.1.1.2 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA | 0.91 | 86.0 | 6.82e-01 | 100.0% | 59.3% |
| 3618364 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.91 | 71.0 | 6.22e-01 | 81.7% | 64.3% |
| 3275547 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.87 | 65.0 | 5.76e-01 | 76.8% | 80.0% |
| 3944436 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.85 | 80.0 | 7.12e-01 | 100.0% | 81.8% |
| 4050509 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.60 | 40.0 | 2.74e-01 | 82.9% | 20.7% |
| 3698045 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 44.0 | 2.86e-01 | 81.7% | 71.1% |
| 3739470 | 192.2.1.31 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 | 0.56 | 46.0 | 3.81e-01 | 100.0% | 50.3% |
| 3924002 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.56 | 27.0 | 2.92e-01 | 93.9% | 55.7% |
| 3721277 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.53 | 36.0 | 2.47e-01 | 98.8% | 18.8% |
| 4928248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 47.0 | 4.02e-01 | 98.8% | 71.5% |
| 3697453 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.51 | 42.0 | 2.87e-01 | 92.7% | 35.9% |
| 3905709 | 243.3.1.22 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cyto_heme_lyase | 0.51 | 42.0 | 3.33e-01 | 92.7% | 52.2% |
| 4954786 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.50 | 42.0 | 4.21e-01 | 100.0% | 89.4% |
| 3195982 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.50 | 41.0 | 2.81e-01 | 92.7% | 25.7% |
D3
medium
residues 9-70
Domain cluster:
rep: SRR1747065_scaffold_5_prodigal-single.1__X__X__00020__D265-326
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 55.0 | 4.62e-01 | 100.0% | 90.8% |
| 1qwrA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 49.0 | 4.42e-01 | 96.8% | 60.7% |
| 1hxdA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.62 | 54.0 | 3.85e-01 | 100.0% | 63.5% |
| 5tk2B00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.61 | 51.0 | 4.63e-01 | 96.8% | 79.5% |
| 1pmiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 51.0 | 3.74e-01 | 96.8% | 42.2% |
| 2pfwA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 49.0 | 4.13e-01 | 96.8% | 51.4% |
| 3ht1A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 50.0 | 3.93e-01 | 96.8% | 41.5% |
| 5fq0A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 49.0 | 4.15e-01 | 96.8% | 52.7% |
| 4h7lB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 49.0 | 4.10e-01 | 96.8% | 49.6% |
| 4mv2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 49.0 | 4.01e-01 | 96.8% | 47.5% |
| 3cewA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 49.0 | 4.19e-01 | 96.8% | 53.6% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 48.0 | 4.13e-01 | 98.4% | 54.8% |
| 2ej9A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 49.0 | 3.67e-01 | 100.0% | 64.9% |
| 5j7mA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 47.0 | 3.90e-01 | 96.8% | 46.7% |
| 3fjsC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 46.0 | 4.03e-01 | 96.8% | 53.3% |
| 2gu9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 46.0 | 4.12e-01 | 96.8% | 57.3% |
| 2opkB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 49.0 | 4.36e-01 | 96.8% | 64.9% |
| 3rnsA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 46.0 | 3.98e-01 | 96.8% | 52.8% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 48.0 | 4.41e-01 | 98.4% | 69.3% |
| 4oi4C01 | 2.60.120.1030 | Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain | 0.58 | 44.0 | 4.08e-01 | 96.8% | 63.1% |
| 3es1A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 46.0 | 3.78e-01 | 96.8% | 45.2% |
| 3eo6A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 44.0 | 3.87e-01 | 96.8% | 52.8% |
| 1pmiA03 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 47.0 | 3.91e-01 | 96.8% | 52.1% |
| 2pytA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 45.0 | 3.67e-01 | 93.5% | 64.8% |
| 1j5wB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 47.0 | 3.31e-01 | 100.0% | 68.2% |
| 2jdaB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 39.0 | 3.15e-01 | 83.9% | 83.1% |
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 36.0 | 3.12e-01 | 72.6% | 73.4% |
| 5e9aB03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 42.0 | 4.21e-01 | 95.2% | 90.3% |
| 1f53A00 | 2.60.20.30 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › | 0.52 | 41.0 | 3.87e-01 | 93.5% | 83.3% |
| 6kghA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 35.0 | 2.56e-01 | 75.8% | 25.3% |
| 5bviA00 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.50 | 41.0 | 3.06e-01 | 96.8% | 62.1% |
| 5of3A00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.50 | 41.0 | 2.67e-01 | 95.2% | 94.7% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185692 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.64 | 55.0 | 4.62e-01 | 100.0% | 90.8% |
| 3219491 | 10.4.1.9 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 | 0.62 | 52.0 | 4.33e-01 | 96.8% | 87.0% |
| 5003675 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.61 | 48.0 | 4.07e-01 | 91.9% | 75.7% |
| 4941739 | 3156.1.1.13 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 | 0.61 | 50.0 | 4.48e-01 | 96.8% | 69.5% |
| 3288347 | 10.12.1.85 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 | 0.60 | 51.0 | 3.83e-01 | 100.0% | 55.0% |
| 3732427 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.59 | 47.0 | 3.53e-01 | 96.8% | 32.8% |
| 3594830 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 50.0 | 3.85e-01 | 98.4% | 44.7% |
| 4681454 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 47.0 | 3.48e-01 | 96.8% | 31.7% |
| 4561709 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.59 | 48.0 | 4.41e-01 | 100.0% | 75.6% |
| 4016056 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.58 | 47.0 | 3.55e-01 | 96.8% | 34.5% |
| 3195147 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.58 | 46.0 | 3.42e-01 | 96.8% | 30.8% |
| 164729 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.58 | 48.0 | 4.17e-01 | 98.4% | 57.5% |
| 3779389 | 10.12.1.97 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C | 0.58 | 48.0 | 3.57e-01 | 96.8% | 57.8% |
| 4304839 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.58 | 46.0 | 3.59e-01 | 96.8% | 36.8% |
| 169161 | 10.12.1.35 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ppnp | 0.58 | 44.0 | 3.87e-01 | 96.8% | 52.8% |
| 4022382 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.57 | 45.0 | 3.41e-01 | 96.8% | 31.7% |
| 4567075 | 10.12.1.84 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom | 0.57 | 47.0 | 3.15e-01 | 96.8% | 21.4% |
| 3714540 | 10.12.1.52 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 | 0.56 | 45.0 | 2.87e-01 | 96.8% | 65.7% |
| 3423323 | 10.13.1.1 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase | 0.56 | 46.0 | 3.74e-01 | 95.2% | 60.8% |
| 3643370 | 10.13.1.0 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A | 0.55 | 46.0 | 3.50e-01 | 95.2% | 49.0% |
| 5029166 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 40.0 | 3.82e-01 | 80.6% | 73.0% |
| 3917042 | 214.1.1.7 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2_1 | 0.52 | 45.0 | 3.48e-01 | 96.8% | 43.7% |
| 4528208 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.50 | 40.0 | 3.82e-01 | 96.8% | 75.0% |
| 4193705 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.50 | 41.0 | 2.79e-01 | 100.0% | 23.6% |