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IMGVR_UViG_3300025902_000346-3300025902-Ga0209202_10104868

Arc-Vir

IMGVR_UViG_3300025902_000346-3300025902-Ga0209202_10104868

Quality

63.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 61-156
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.73 67.0 5.79e-01 100.0% 76.0%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 63.0 5.87e-01 100.0% 84.3%
6a6yA00 2.60.40.1490 Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like 0.54 49.0 4.20e-01 100.0% 92.1%
4do8A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 35.0 3.90e-01 88.5% 93.9%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 41.0 2.86e-01 91.7% 50.3%
3eb7A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.50 40.0 3.24e-01 87.5% 80.2%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.76e-01 95.8% 96.7%
2l03A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.50 34.0 3.81e-01 86.5% 93.2%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038875 4166.1.1.0 beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like 0.85 80.0 7.50e-01 100.0% 83.5%
3589732 4166.1.1.2 beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Caudo_bapla_N 0.73 67.0 5.66e-01 100.0% 74.8%
393101 4166.1.1.3 beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Gp22 0.69 61.0 5.59e-01 100.0% 81.1%
3407319 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 50.0 4.49e-01 99.0% 90.8%
3694825 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 42.0 2.78e-01 85.4% 40.2%
D2 high residues 334-436
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nxzA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.58 37.0 4.21e-01 99.0% 90.3%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.56 35.0 4.15e-01 100.0% 97.0%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 35.0 2.95e-01 100.0% 36.3%
1r3fA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.52 32.0 3.87e-01 89.3% 98.5%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3288021 2008.6.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.55 36.0 2.97e-01 100.0% 37.8%
3562105 387.1.1.10 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF 0.51 23.0 3.25e-01 100.0% 93.3%
D3 medium residues 1-51
PDB