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IMGVR_UViG_3300025997_000016-3300025997-Ga0210013_10002341
Arc-VirIMGVR_UViG_3300025997_000016-3300025997-Ga0210013_10002341
Identity
- Kingdom:
- archaea
Quality
72.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-37
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.81 | 66.0 | 4.41e-01 | 97.3% | 24.6% |
| 2hoeA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 51.0 | 4.51e-01 | 83.8% | 51.7% |
| 4izzB02 | 1.10.10.1680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain | 0.68 | 52.0 | 4.40e-01 | 89.2% | 51.5% |
| 2zc2A00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.67 | 51.0 | 4.35e-01 | 97.3% | 54.7% |
| 3hjlA03 | 1.20.5.2020 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 47.0 | 4.62e-01 | 83.8% | 68.3% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.64 | 43.0 | 3.55e-01 | 70.3% | 38.8% |
| 4n1aB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 54.0 | 3.16e-01 | 97.3% | 52.3% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.63 | 49.0 | 3.99e-01 | 86.5% | 46.5% |
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.62 | 49.0 | 5.02e-01 | 100.0% | 97.2% |
| 2b5dX02 | 1.20.1430.10 | Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain | 0.59 | 48.0 | 3.55e-01 | 100.0% | 62.3% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.57 | 40.0 | 3.25e-01 | 75.7% | 40.3% |
| 4gtnA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.56 | 49.0 | 3.90e-01 | 100.0% | 93.2% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.56 | 42.0 | 3.99e-01 | 91.9% | 70.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3565003 | 165.1.1.3 ↗ | alpha duplicates or obligate multimers › Dimerisation interlock › SinR repressor dimerisation domain-like › SinR repressor dimerisation domain-like › PF28222 | 0.97 | 83.0 | 8.51e-01 | 91.9% | 97.1% |
| 4985070 | 102.3.1.1 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha | 0.89 | 75.0 | 5.94e-01 | 97.3% | 48.0% |
| 3958300 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.82 | 70.0 | 4.19e-01 | 97.3% | 22.4% |
| 4490196 | 108.1.1.207 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › PF30486 | 0.80 | 66.0 | 5.24e-01 | 97.3% | 46.3% |
| 4979276 | 2007.1.6.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain | 0.75 | 64.0 | 4.07e-01 | 100.0% | 55.1% |
| 3955892 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.71 | 51.0 | 4.60e-01 | 78.4% | 56.0% |
| 5079692 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.71 | 55.0 | 4.12e-01 | 100.0% | 33.9% |
| 1765837 | 148.1.3.34 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Gp44_lid | 0.70 | 58.0 | 5.32e-01 | 97.3% | 71.4% |
| 4982590 | 101.1.2.750 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27374 | 0.69 | 53.0 | 4.17e-01 | 94.6% | 38.9% |
| 3263385 | 3009.1.1.0 ↗ | alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like | 0.69 | 60.0 | 4.81e-01 | 100.0% | 49.3% |