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IMGVR_UViG_3300026076_000400-3300026076-Ga0208261_10042064
Arc-VirIMGVR_UViG_3300026076_000400-3300026076-Ga0208261_10042064
Identity
- Kingdom:
- archaea
Quality
80.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 349-417
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02881.25 best | SRP54_N | 32.6 | 1.00e-07 | 89.9% | 72.0% |
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.82 | 67.0 | 6.12e-01 | 97.1% | 68.5% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.81 | 74.0 | 6.89e-01 | 100.0% | 81.0% |
| 1ls1A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.81 | 72.0 | 6.60e-01 | 97.1% | 75.3% |
| 4nqwA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.80 | 73.0 | 6.81e-01 | 100.0% | 94.0% |
| 3e70C01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.80 | 69.0 | 6.14e-01 | 100.0% | 67.0% |
| 2o7gA00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.78 | 70.0 | 6.46e-01 | 100.0% | 86.4% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.76 | 69.0 | 6.19e-01 | 100.0% | 80.9% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.76 | 65.0 | 6.07e-01 | 94.2% | 76.7% |
| 3ibyD02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 47.0 | 4.44e-01 | 94.2% | 53.6% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.74 | 50.0 | 3.55e-01 | 71.0% | 25.1% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.74 | 54.0 | 5.36e-01 | 85.5% | 75.0% |
| 6pmiF01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.73 | 63.0 | 6.06e-01 | 98.6% | 95.0% |
| 1mjtB01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.73 | 49.0 | 3.98e-01 | 85.5% | 37.2% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.72 | 61.0 | 5.59e-01 | 95.7% | 81.3% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.71 | 60.0 | 5.27e-01 | 94.2% | 99.0% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.71 | 52.0 | 5.58e-01 | 87.0% | 96.4% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.69 | 60.0 | 5.68e-01 | 100.0% | 87.1% |
| 1sigA00 | 1.10.601.10 | Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor | 0.68 | 58.0 | 3.89e-01 | 100.0% | 97.0% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.68 | 57.0 | 5.31e-01 | 94.2% | 74.4% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.68 | 58.0 | 5.43e-01 | 97.1% | 81.2% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.68 | 57.0 | 5.37e-01 | 97.1% | 81.6% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.67 | 57.0 | 5.36e-01 | 98.6% | 83.0% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.66 | 55.0 | 5.58e-01 | 94.2% | 97.0% |
| 3kzhB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.65 | 50.0 | 3.31e-01 | 97.1% | 18.8% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.65 | 52.0 | 5.06e-01 | 89.9% | 78.5% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.65 | 57.0 | 5.41e-01 | 98.6% | 88.9% |
| 3gbhB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.64 | 46.0 | 3.26e-01 | 76.8% | 24.4% |
| 3bf5A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.63 | 49.0 | 3.46e-01 | 98.6% | 25.2% |
| 4gm6A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.62 | 54.0 | 3.51e-01 | 98.6% | 95.0% |
| 3tuiD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 46.0 | 3.27e-01 | 87.0% | 41.4% |
| 6cw0A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.58 | 49.0 | 4.35e-01 | 97.1% | 75.0% |
| 5w1uA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 47.0 | 2.80e-01 | 92.8% | 37.1% |
| 4n4pD00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 45.0 | 3.02e-01 | 88.4% | 83.7% |
| 7kznP01 | 3.30.740.10 | Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 0.55 | 44.0 | 4.00e-01 | 87.0% | 94.6% |
| 3vouB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 42.0 | 3.35e-01 | 82.6% | 45.6% |
| 1usyC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 48.0 | 3.20e-01 | 98.6% | 43.4% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 41.0 | 3.67e-01 | 82.6% | 57.1% |
| 1z19A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.53 | 41.0 | 3.71e-01 | 85.5% | 95.0% |
| 2k36A00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.53 | 37.0 | 2.98e-01 | 75.4% | 92.6% |
| 1gkuB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 3.42e-01 | 100.0% | 91.1% |
| 6lqfA01 | 1.10.150.60 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain | 0.52 | 40.0 | 3.60e-01 | 85.5% | 93.0% |
| 4xkyA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 43.0 | 2.91e-01 | 98.6% | 96.3% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.50 | 43.0 | 3.95e-01 | 94.2% | 76.4% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.50 | 42.0 | 3.67e-01 | 100.0% | 81.2% |
ECOD (74)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593300 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.96 | 91.0 | 8.54e-01 | 100.0% | 85.0% |
| 3483004 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.96 | 90.0 | 8.52e-01 | 100.0% | 85.0% |
| 4028839 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.92 | 87.0 | 8.23e-01 | 100.0% | 86.3% |
| 3171507 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.91 | 85.0 | 8.02e-01 | 98.6% | 85.0% |
| 5038065 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.91 | 83.0 | 8.25e-01 | 98.6% | 95.7% |
| 5022381 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.90 | 83.0 | 6.66e-01 | 100.0% | 54.4% |
| 3684651 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.90 | 85.0 | 7.82e-01 | 100.0% | 88.2% |
| 5005678 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.90 | 81.0 | 6.50e-01 | 98.6% | 53.6% |
| 3835982 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.86 | 78.0 | 6.92e-01 | 100.0% | 71.6% |
| 3723073 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.86 | 76.0 | 7.24e-01 | 98.6% | 83.7% |
| 4512923 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.85 | 76.0 | 7.05e-01 | 98.6% | 78.8% |
| 3171901 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.85 | 75.0 | 6.69e-01 | 95.7% | 73.7% |
| 4945955 | 181.1.1.32 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54 | 0.84 | 74.0 | 6.90e-01 | 98.6% | 78.8% |
| 3988991 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.84 | 74.0 | 6.73e-01 | 97.1% | 73.3% |
| 4996540 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.84 | 75.0 | 6.93e-01 | 97.1% | 78.8% |
| 4929833 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.84 | 74.0 | 6.73e-01 | 98.6% | 74.4% |
| 4518433 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.83 | 75.0 | 6.79e-01 | 100.0% | 75.6% |
| 4936754 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.82 | 74.0 | 6.07e-01 | 100.0% | 56.7% |
| 5038476 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.82 | 72.0 | 7.19e-01 | 100.0% | 97.1% |
| 4131202 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.81 | 74.0 | 6.46e-01 | 100.0% | 68.0% |
| 5043220 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.81 | 69.0 | 6.43e-01 | 94.2% | 75.3% |
| 4931260 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.80 | 71.0 | 6.00e-01 | 100.0% | 60.2% |
| 4130802 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.80 | 70.0 | 6.53e-01 | 97.1% | 77.6% |
| 5044994 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.80 | 69.0 | 6.49e-01 | 95.7% | 77.6% |
| 5065917 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.80 | 72.0 | 5.90e-01 | 100.0% | 56.7% |
| 5068278 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.80 | 72.0 | 6.21e-01 | 100.0% | 65.7% |
| 3436690 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.79 | 69.0 | 6.29e-01 | 95.7% | 73.3% |
| 3603904 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.79 | 69.0 | 6.26e-01 | 97.1% | 73.3% |
| 4943201 | 181.1.1.32 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54 | 0.78 | 68.0 | 6.33e-01 | 97.1% | 77.6% |
| 3960310 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.78 | 71.0 | 7.10e-01 | 100.0% | 98.6% |
| 5067431 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.77 | 69.0 | 5.69e-01 | 100.0% | 55.8% |
| 5059346 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.77 | 69.0 | 6.50e-01 | 100.0% | 81.2% |
| 4281322 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.77 | 70.0 | 6.00e-01 | 100.0% | 64.8% |
| 5027801 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.77 | 68.0 | 5.92e-01 | 100.0% | 64.8% |
| 4573573 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.76 | 66.0 | 6.02e-01 | 94.2% | 75.6% |
| 4367678 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.76 | 65.0 | 6.66e-01 | 94.2% | 100.0% |
| 3967936 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.76 | 68.0 | 6.66e-01 | 100.0% | 96.0% |
| 4928130 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.76 | 66.0 | 6.02e-01 | 95.7% | 73.3% |
| 5053895 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.75 | 65.0 | 6.07e-01 | 95.7% | 81.2% |
| 3190824 | 166.1.1.0 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C | 0.75 | 63.0 | 6.22e-01 | 94.2% | 97.3% |
| 5042713 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.74 | 64.0 | 5.96e-01 | 95.7% | 77.6% |
| 4990634 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.73 | 65.0 | 5.96e-01 | 100.0% | 75.6% |
| 4948728 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.72 | 63.0 | 5.69e-01 | 100.0% | 71.6% |
| 4164998 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.72 | 59.0 | 5.29e-01 | 92.8% | 72.0% |
| 1671339 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.72 | 61.0 | 5.39e-01 | 95.7% | 72.5% |
| 4109098 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.71 | 61.0 | 5.56e-01 | 97.1% | 74.5% |
| 4970556 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.71 | 56.0 | 5.39e-01 | 87.0% | 73.8% |
| 3339567 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.70 | 60.0 | 4.51e-01 | 100.0% | 77.8% |
| 3972284 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.69 | 60.0 | 5.13e-01 | 100.0% | 71.3% |
| 4941150 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.69 | 59.0 | 4.81e-01 | 91.3% | 83.3% |
| 4053923 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.69 | 59.0 | 5.25e-01 | 100.0% | 78.1% |
| 4682059 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.69 | 58.0 | 5.30e-01 | 95.7% | 81.7% |
| 4076702 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.68 | 57.0 | 5.14e-01 | 95.7% | 69.0% |
| 4118286 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.68 | 54.0 | 5.09e-01 | 88.4% | 74.1% |
| 4940761 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.67 | 57.0 | 5.70e-01 | 97.1% | 94.3% |
| 4104241 | 148.1.3.327 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CCD48 | 0.65 | 48.0 | 4.29e-01 | 78.3% | 63.2% |
| 3637195 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.63 | 53.0 | 4.85e-01 | 100.0% | 90.0% |
| 4648382 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.63 | 53.0 | 4.20e-01 | 95.7% | 73.1% |
| 3590851 | 181.2.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › CtsR dimerization domain › CtsR dimerization domain › CtsR_C | 0.62 | 48.0 | 4.65e-01 | 88.4% | 75.0% |
| 4508763 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.61 | 50.0 | 4.67e-01 | 97.1% | 73.3% |
| 4475717 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.61 | 52.0 | 4.03e-01 | 100.0% | 72.9% |
| 4080592 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.61 | 50.0 | 4.69e-01 | 97.1% | 75.6% |
| 3592200 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.60 | 44.0 | 2.92e-01 | 79.7% | 26.5% |
| 60261 | 166.1.1.0 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C | 0.60 | 49.0 | 4.51e-01 | 98.6% | 70.5% |
| 4462943 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.59 | 48.0 | 4.56e-01 | 97.1% | 77.8% |
| 4198887 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.59 | 54.0 | 4.65e-01 | 100.0% | 99.0% |
| 3289226 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.58 | 49.0 | 4.28e-01 | 100.0% | 73.0% |
| 1292974 | 2002.1.1.29 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS | 0.57 | 45.0 | 3.03e-01 | 88.4% | 83.1% |
| 3503894 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.56 | 46.0 | 4.41e-01 | 89.9% | 87.5% |
| 5060652 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.55 | 43.0 | 4.40e-01 | 84.1% | 89.2% |
| 5006608 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.54 | 45.0 | 4.29e-01 | 91.3% | 91.3% |
| 5022467 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.53 | 41.0 | 3.61e-01 | 82.6% | 62.0% |
| 2426527 | 2002.1.1.29 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS | 0.53 | 44.0 | 2.93e-01 | 92.8% | 95.2% |
| 4016101 | 611.7.1.0 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain | 0.52 | 44.0 | 3.69e-01 | 94.2% | 95.0% |
D2
high
residues 432-631
Domain cluster:
rep: CAKLQF020000008.1__CAH1082018.1__SAMEA5780031_01882__00127__D165-364
Pfam (7)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00448.29 best | SRP54 | 246.5 | 2.50e-73 | 98.0% | 99.0% |
| PF03308.23 | MeaB | 26.0 | 6.00e-06 | 82.5% | 41.0% |
| PF13604.13 | AAA_30 | 30.5 | 4.20e-07 | 75.0% | 53.9% |
| PF13671.13 | AAA_33 | 29.6 | 1.10e-06 | 69.0% | 75.5% |
| PF00004.36 | AAA | 21.3 | 4.40e-04 | 68.5% | 55.7% |
| PF13401.13 | AAA_22 | 34.3 | 3.90e-08 | 64.5% | 88.5% |
| PF06414.19 | Zeta_toxin | 26.7 | 4.90e-06 | 63.5% | 53.8% |
D3
medium
residues 15-27_44-184_251-288
Domain cluster:
rep: KF147891.1__AGS82101.2__PaBG_00226__00221__D18-84_107-179_232-249
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4paaA05 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.72 | 31.0 | 4.77e-01 | 75.0% | 97.5% |
| 1v5vA03 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.70 | 29.0 | 4.67e-01 | 74.5% | 100.0% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.70 | 32.0 | 4.69e-01 | 83.9% | 96.5% |
| 3girA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.70 | 30.0 | 4.61e-01 | 75.0% | 98.7% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 30.0 | 4.23e-01 | 77.1% | 88.9% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.65 | 29.0 | 4.34e-01 | 77.1% | 98.7% |
| 3b82A06 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 29.0 | 3.55e-01 | 78.6% | 62.8% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 26.0 | 4.14e-01 | 84.9% | 97.3% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 30.0 | 4.40e-01 | 81.2% | 100.0% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.64 | 29.0 | 4.20e-01 | 77.1% | 96.3% |
| 2nzcB00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.63 | 29.0 | 4.21e-01 | 78.1% | 98.8% |
| 1y7pB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 28.0 | 4.17e-01 | 76.6% | 98.8% |
| 2d69B01 | 3.30.70.150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain | 0.63 | 36.0 | 4.44e-01 | 82.3% | 87.3% |
| 3mwbB03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 30.0 | 4.04e-01 | 77.6% | 88.4% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 26.0 | 3.86e-01 | 87.0% | 90.2% |
| 5is2A01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 30.0 | 4.08e-01 | 82.3% | 94.5% |
| 1u8sA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 29.0 | 4.05e-01 | 78.6% | 96.5% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 30.0 | 4.23e-01 | 91.7% | 100.0% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.59 | 31.0 | 4.24e-01 | 76.6% | 100.0% |
| 2e7vA01 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.59 | 32.0 | 4.26e-01 | 73.4% | 96.2% |
| 4q7aC02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 34.0 | 4.31e-01 | 77.1% | 99.1% |
| 2r4fA03 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.57 | 33.0 | 4.18e-01 | 82.3% | 94.9% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.56 | 31.0 | 3.88e-01 | 75.5% | 89.3% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 32.0 | 4.21e-01 | 76.0% | 100.0% |
| 1x5oA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 27.0 | 3.81e-01 | 76.0% | 100.0% |
| 2qrrA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 29.0 | 3.91e-01 | 85.4% | 97.9% |
| 3f62A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 29.0 | 3.73e-01 | 87.0% | 88.0% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 32.0 | 4.03e-01 | 82.3% | 96.4% |
| 3i4hX02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 30.0 | 3.97e-01 | 77.1% | 99.0% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 29.0 | 3.82e-01 | 78.6% | 98.0% |
| 1tz0B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 28.0 | 3.70e-01 | 79.2% | 97.9% |
| 1g84A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 27.0 | 3.43e-01 | 85.4% | 84.8% |
| 3d7aA01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.53 | 33.0 | 3.80e-01 | 78.6% | 86.8% |
| 2nwuB01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.51 | 30.0 | 3.55e-01 | 88.0% | 85.7% |
| 6ue9L02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 27.0 | 3.31e-01 | 85.4% | 78.7% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3602442 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.70 | 39.0 | 5.27e-01 | 72.9% | 98.2% |
| 4025330 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.69 | 32.0 | 4.74e-01 | 85.4% | 98.8% |
| 3256920 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 34.0 | 4.24e-01 | 80.2% | 75.2% |
| 3383879 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 27.0 | 4.23e-01 | 70.3% | 96.0% |
| 136544 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.66 | 29.0 | 4.32e-01 | 77.1% | 97.5% |
| 3965651 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.65 | 27.0 | 4.24e-01 | 75.0% | 98.7% |
| 4116290 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.65 | 35.0 | 4.73e-01 | 89.6% | 100.0% |
| 5015637 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.65 | 28.0 | 4.17e-01 | 77.6% | 95.0% |
| 4439773 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.65 | 28.0 | 3.98e-01 | 77.6% | 87.1% |
| 4438073 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.64 | 28.0 | 4.12e-01 | 76.6% | 92.8% |
| 3969661 | 304.8.1.103 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26954 | 0.64 | 29.0 | 4.14e-01 | 77.1% | 92.9% |
| 5078653 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.63 | 29.0 | 4.16e-01 | 77.6% | 94.1% |
| 4547137 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.63 | 30.0 | 4.33e-01 | 85.4% | 100.0% |
| 3308135 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 29.0 | 4.06e-01 | 84.9% | 90.0% |
| 3602523 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.62 | 27.0 | 3.99e-01 | 76.0% | 90.6% |
| 5051000 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.62 | 28.0 | 4.06e-01 | 77.6% | 94.0% |
| 5043867 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.62 | 27.0 | 4.09e-01 | 94.3% | 100.0% |
| 3317095 | 304.9.1.122 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › bHLH-TF_ACT-like_plant | 0.62 | 25.0 | 3.96e-01 | 71.9% | 98.6% |
| 3284562 | 304.8.1.9 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 | 0.62 | 29.0 | 4.15e-01 | 77.1% | 97.6% |
| 3815383 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 28.0 | 4.01e-01 | 99.5% | 92.9% |
| 302769 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.61 | 29.0 | 4.00e-01 | 78.1% | 89.5% |
| 4105300 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.61 | 32.0 | 4.36e-01 | 85.9% | 100.0% |
| 3974776 | 304.8.1.9 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 | 0.61 | 27.0 | 3.96e-01 | 74.5% | 100.0% |
| 4979070 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.60 | 34.0 | 4.35e-01 | 78.6% | 97.1% |
| 4403911 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.60 | 32.0 | 4.32e-01 | 84.9% | 98.0% |
| 3952346 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.60 | 34.0 | 3.93e-01 | 91.7% | 74.5% |
| 5039158 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.60 | 48.0 | 5.29e-01 | 83.9% | 100.0% |
| 3784654 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.59 | 29.0 | 3.93e-01 | 87.0% | 91.5% |
| 4074612 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.59 | 31.0 | 4.19e-01 | 85.4% | 100.0% |
| 4119510 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.58 | 31.0 | 4.14e-01 | 85.9% | 97.0% |
| 3786740 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.58 | 30.0 | 3.85e-01 | 78.6% | 82.6% |
| 4939612 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.58 | 35.0 | 4.47e-01 | 80.2% | 100.0% |
| 4304504 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.58 | 31.0 | 4.10e-01 | 85.9% | 96.0% |
| 3477897 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.58 | 29.0 | 3.97e-01 | 83.3% | 96.7% |
| 3445191 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.58 | 24.0 | 3.71e-01 | 81.8% | 96.0% |
| 4274127 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.58 | 31.0 | 4.09e-01 | 85.9% | 98.0% |
| 4519027 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.57 | 27.0 | 3.83e-01 | 76.0% | 97.6% |
| 4196383 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.57 | 30.0 | 4.05e-01 | 83.9% | 98.0% |
| 3386922 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 24.0 | 3.50e-01 | 83.3% | 90.0% |
| 4011585 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.55 | 34.0 | 3.74e-01 | 73.4% | 74.8% |
| 169921 | 11.1.1.77 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pox_vIL-18BP | 0.55 | 29.0 | 3.73e-01 | 87.0% | 88.0% |
| 3962699 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.55 | 28.0 | 3.10e-01 | 70.8% | 58.1% |
| 3986531 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.55 | 31.0 | 3.66e-01 | 77.1% | 77.9% |
| 4975956 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.54 | 23.0 | 3.26e-01 | 70.8% | 83.5% |
| 3603165 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 31.0 | 3.87e-01 | 76.6% | 92.2% |
| 4940988 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.53 | 28.0 | 3.61e-01 | 71.4% | 88.2% |
| 3789254 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.51 | 33.0 | 4.01e-01 | 74.5% | 100.0% |
| 3519306 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.51 | 27.0 | 3.49e-01 | 85.4% | 89.1% |
D4
medium
residues 185-250
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ba0A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 34.0 | 3.78e-01 | 71.2% | 70.6% |
| 2lvhA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.60 | 37.0 | 4.40e-01 | 83.3% | 93.3% |
| 2z1kA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 35.0 | 3.22e-01 | 72.7% | 44.7% |
| 1j0hA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 33.0 | 3.05e-01 | 87.9% | 49.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3941222 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.54 | 40.0 | 3.59e-01 | 83.3% | 89.0% |
| 3240412 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.54 | 40.0 | 3.32e-01 | 83.3% | 69.2% |
| 3487365 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.54 | 40.0 | 3.32e-01 | 83.3% | 67.7% |
| 3895241 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.51 | 38.0 | 3.58e-01 | 84.8% | 97.8% |
| 3873624 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.51 | 38.0 | 3.21e-01 | 86.4% | 66.7% |
| 3755360 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.51 | 38.0 | 2.76e-01 | 86.4% | 38.3% |
| 1890481 | 221.1.1.51 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 | 0.51 | 39.0 | 3.20e-01 | 84.8% | 46.5% |
| 3439268 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.51 | 38.0 | 3.24e-01 | 87.9% | 73.1% |
| 3206942 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 39.0 | 3.31e-01 | 90.9% | 75.4% |