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IMGVR_UViG_3300026145_000203-3300026145-Ga0265405_107162214

Arc-Vir

IMGVR_UViG_3300026145_000203-3300026145-Ga0265405_107162214

Quality

87.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-90
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jrtA00 1.20.120.1060 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.87 37.0 2.95e-01 78.9% 22.9%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.85 50.0 5.37e-01 90.0% 67.9%
3u0cA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.84 67.0 5.49e-01 100.0% 49.7%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.81 41.0 4.03e-01 88.9% 47.4%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.81 50.0 4.32e-01 84.4% 43.1%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.79 54.0 4.94e-01 96.7% 55.3%
1quuA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 51.0 4.56e-01 91.1% 47.6%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.78 43.0 4.83e-01 88.9% 69.0%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.78 52.0 4.91e-01 88.9% 57.9%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.77 43.0 4.51e-01 80.0% 60.0%
2yv9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.74 47.0 4.04e-01 82.2% 42.5%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.73 46.0 4.70e-01 84.4% 64.4%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.73 46.0 3.73e-01 92.2% 36.1%
4rm7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.72 48.0 4.12e-01 81.1% 44.6%
6v9zA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.71 64.0 4.30e-01 100.0% 27.1%
8a1gC01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.70 64.0 5.05e-01 100.0% 55.8%
4doyA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.70 53.0 4.14e-01 88.9% 39.3%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.69 40.0 4.37e-01 81.1% 69.9%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.69 48.0 5.08e-01 73.3% 91.4%
3ofnY00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.68 63.0 5.76e-01 100.0% 87.0%
4flaC00 6.10.250.2560 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 58.0 5.10e-01 100.0% 65.4%
3fb2A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 42.0 4.05e-01 86.7% 54.3%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.67 61.0 4.13e-01 100.0% 65.7%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.67 61.0 4.67e-01 98.9% 77.0%
1i4dA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.66 60.0 4.72e-01 100.0% 47.9%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 44.0 4.11e-01 82.2% 55.5%
2ficB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.66 60.0 4.58e-01 100.0% 44.8%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 58.0 4.34e-01 100.0% 46.4%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 46.0 4.35e-01 81.1% 63.5%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 44.0 4.18e-01 83.3% 60.9%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 55.0 4.07e-01 100.0% 37.6%
3i2wA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 53.0 3.88e-01 95.6% 61.6%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.62 46.0 4.40e-01 77.8% 68.0%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.61 49.0 4.78e-01 85.6% 84.8%
1hciA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 44.0 4.00e-01 86.7% 54.8%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.60 53.0 4.22e-01 97.8% 48.6%
4nqiD00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.60 54.0 4.01e-01 100.0% 40.1%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.60 51.0 4.59e-01 88.9% 91.5%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.58 51.0 5.06e-01 100.0% 94.7%
1x46A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 36.0 3.03e-01 74.4% 37.3%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 42.0 4.43e-01 76.7% 87.3%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 40.0 3.75e-01 85.6% 58.0%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.58 37.0 3.26e-01 71.1% 41.8%
3lbxB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 3.76e-01 72.2% 60.7%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 36.0 4.21e-01 74.4% 95.2%
1hwyA03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 40.0 2.71e-01 82.2% 86.4%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995732 604.32.1.0 alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY 0.92 86.0 7.24e-01 100.0% 63.6%
4033713 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.85 67.0 5.60e-01 100.0% 52.1%
3977409 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.84 70.0 6.00e-01 100.0% 58.5%
3962942 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.82 71.0 5.84e-01 100.0% 54.7%
3611632 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.80 59.0 5.65e-01 93.3% 68.0%
4982830 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.78 70.0 5.68e-01 100.0% 53.8%
4018370 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.77 66.0 5.75e-01 98.9% 63.1%
3598168 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.75 69.0 5.51e-01 100.0% 53.3%
3699468 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 70.0 5.27e-01 100.0% 45.0%
3387160 3755.1.1.8 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › FliJ 0.75 68.0 5.75e-01 100.0% 62.1%
3742112 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.75 46.0 4.36e-01 85.6% 52.9%
3976215 105.2.1.0 alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C 0.74 56.0 4.53e-01 82.2% 45.2%
4408647 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.74 48.0 4.56e-01 97.8% 56.2%
3520603 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.74 66.0 3.89e-01 100.0% 13.8%
4110261 3748.1.1.2 extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › CSN5_C 0.74 51.0 5.22e-01 94.4% 75.3%
3880841 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.73 68.0 5.30e-01 100.0% 69.4%
3468090 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.73 57.0 5.27e-01 100.0% 66.1%
4002301 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.72 65.0 4.08e-01 100.0% 20.2%
3538067 633.10.1.15 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Transmemb_17 0.72 45.0 4.51e-01 85.6% 62.2%
3949633 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.72 68.0 5.06e-01 100.0% 45.0%
3504347 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.72 50.0 4.94e-01 78.9% 68.4%
3235820 604.26.1.0 alpha bundles › Spectrin repeat-like › Bag6-BAG › Bag6-BAG 0.71 66.0 5.16e-01 100.0% 51.7%
5042955 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.71 66.0 3.94e-01 100.0% 15.4%
4042824 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.71 46.0 4.83e-01 88.9% 73.8%
3961547 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.70 47.0 4.55e-01 91.1% 61.0%
4960061 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.70 51.0 4.93e-01 75.6% 68.0%
4136919 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.70 63.0 4.88e-01 100.0% 47.0%
3403227 192.8.1.465 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHD5 0.70 59.0 5.56e-01 100.0% 75.5%
3515126 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.69 63.0 4.98e-01 100.0% 50.9%
4018124 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.69 63.0 4.55e-01 100.0% 48.8%
3280119 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.68 62.0 4.90e-01 100.0% 64.4%
3784055 192.24.1.0 alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.68 60.0 5.34e-01 98.9% 71.5%
4963638 192.29.1.308 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF7321 0.68 47.0 4.03e-01 76.7% 46.4%
4029425 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.68 32.0 3.36e-01 70.0% 47.1%
4025271 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.67 42.0 4.11e-01 77.8% 56.0%
3437287 5086.1.1.199 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PF31016 0.67 62.0 4.88e-01 100.0% 52.0%
4203130 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 53.0 4.93e-01 86.7% 67.8%
4016292 192.2.1.18 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.66 60.0 5.20e-01 100.0% 65.9%
3696833 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 45.0 4.30e-01 91.1% 60.0%
3656716 3755.3.1.498 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF31016 0.66 61.0 5.16e-01 100.0% 62.8%
3562849 148.1.3.254 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › KIF21A_4th 0.66 61.0 4.44e-01 100.0% 57.4%
3470486 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.64 54.0 3.90e-01 93.3% 45.3%
3470585 5054.1.1.2 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.64 54.0 3.88e-01 93.3% 44.4%
4575614 5045.1.1.1 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A 0.63 53.0 3.85e-01 100.0% 32.3%
5017743 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.63 44.0 4.53e-01 72.2% 76.5%
5083776 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.62 42.0 4.13e-01 71.1% 65.3%
3493924 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.62 55.0 3.96e-01 100.0% 58.5%
3723174 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 43.0 4.70e-01 81.1% 88.0%
3252533 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.61 54.0 4.13e-01 100.0% 43.3%
3600217 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.60 51.0 3.62e-01 92.2% 32.4%
3497418 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 41.0 3.96e-01 70.0% 63.0%
3640846 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.58 45.0 3.72e-01 96.7% 46.1%
4234794 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.58 44.0 3.29e-01 84.4% 76.9%
4283243 2004.1.1.149 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD 0.57 45.0 3.08e-01 86.7% 23.2%
3703087 150.1.1.104 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Piezo_THU9_anchor 0.54 41.0 3.27e-01 81.1% 66.1%