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IMGVR_UViG_3300026158_000257-3300026158-Ga0265423_1288414
Arc-VirIMGVR_UViG_3300026158_000257-3300026158-Ga0265423_1288414
Identity
- Kingdom:
- archaea
Quality
89.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-74
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mh4A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.70 | 35.0 | 2.93e-01 | 96.6% | 28.7% |
| 2xssA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.67 | 48.0 | 3.56e-01 | 77.6% | 66.7% |
| 2onfA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.64 | 52.0 | 3.94e-01 | 100.0% | 38.1% |
| 4mt4A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.60 | 50.0 | 2.97e-01 | 96.6% | 50.6% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.59 | 51.0 | 3.44e-01 | 100.0% | 56.5% |
| 5n1tA03 | 3.90.760.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain | 0.59 | 46.0 | 4.40e-01 | 91.4% | 73.2% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.59 | 46.0 | 3.36e-01 | 89.7% | 44.7% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 36.0 | 4.10e-01 | 82.8% | 94.9% |
| 2kf2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 47.0 | 3.46e-01 | 96.6% | 88.0% |
| 2kt9A01 | 3.30.390.140 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.56 | 40.0 | 3.42e-01 | 77.6% | 83.8% |
| 1cx8A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.56 | 44.0 | 2.91e-01 | 94.8% | 63.2% |
| 4ohxA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 45.0 | 3.02e-01 | 91.4% | 43.4% |
| 7bj4A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 42.0 | 2.69e-01 | 93.1% | 81.6% |
| 2ql8A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.54 | 43.0 | 3.22e-01 | 100.0% | 35.7% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.54 | 40.0 | 2.71e-01 | 82.8% | 45.3% |
| 6vq6H01 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 43.0 | 2.96e-01 | 87.9% | 31.4% |
| 2w40A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 44.0 | 3.04e-01 | 98.3% | 77.3% |
| 1lc0A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 44.0 | 3.32e-01 | 93.1% | 91.2% |
| 3g2eB00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.53 | 43.0 | 3.07e-01 | 91.4% | 88.1% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.53 | 43.0 | 3.05e-01 | 91.4% | 33.2% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.52 | 41.0 | 3.78e-01 | 91.4% | 83.7% |
| 3ddcB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 40.0 | 3.15e-01 | 87.9% | 75.9% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 47.0 | 3.19e-01 | 98.3% | 39.9% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 38.0 | 2.85e-01 | 86.2% | 67.6% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.51 | 40.0 | 2.93e-01 | 87.9% | 70.5% |
| 2ea9A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 42.0 | 3.55e-01 | 91.4% | 55.3% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 39.0 | 2.91e-01 | 91.4% | 99.5% |
| 3cerC01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 39.0 | 3.21e-01 | 91.4% | 88.3% |
| 1vq0A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.50 | 38.0 | 2.70e-01 | 89.7% | 82.8% |
| 4my0C01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 36.0 | 2.67e-01 | 75.9% | 33.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3792396 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.69 | 49.0 | 3.42e-01 | 75.9% | 51.6% |
| 4984373 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.68 | 41.0 | 2.77e-01 | 84.5% | 17.6% |
| 5052927 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 41.0 | 3.09e-01 | 98.3% | 25.9% |
| 3280179 | 2004.1.1.552 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C | 0.65 | 40.0 | 2.36e-01 | 94.8% | 7.4% |
| 4979129 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.65 | 41.0 | 2.95e-01 | 100.0% | 24.8% |
| 4886985 | 7523.1.1.16 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP | 0.63 | 43.0 | 3.34e-01 | 72.4% | 51.2% |
| 3291254 | 2004.1.1.286 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TraG-D_C | 0.63 | 47.0 | 2.73e-01 | 81.0% | 14.0% |
| 3932435 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.62 | 53.0 | 3.25e-01 | 94.8% | 32.5% |
| 3533633 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 43.0 | 3.40e-01 | 74.1% | 75.8% |
| 3503534 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.60 | 44.0 | 3.30e-01 | 77.6% | 36.6% |
| 4032043 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.58 | 49.0 | 3.63e-01 | 98.3% | 95.8% |
| 3936858 | 11.12.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb | 0.57 | 41.0 | 2.47e-01 | 77.6% | 11.8% |
| 4979007 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.57 | 46.0 | 3.44e-01 | 87.9% | 50.0% |
| 3595936 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 48.0 | 2.98e-01 | 94.8% | 45.3% |
| 3982740 | 5086.1.1.190 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP | 0.56 | 40.0 | 2.76e-01 | 75.9% | 44.0% |
| 3254341 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.56 | 43.0 | 2.87e-01 | 91.4% | 18.5% |
| 3997193 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.56 | 46.0 | 2.89e-01 | 96.6% | 94.0% |
| 3788129 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.56 | 40.0 | 3.67e-01 | 75.9% | 90.7% |
| 3717787 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 44.0 | 2.65e-01 | 98.3% | 12.3% |
| 5041611 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.55 | 45.0 | 3.15e-01 | 91.4% | 33.3% |
| 4344712 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.54 | 44.0 | 3.62e-01 | 87.9% | 52.0% |
| 10062 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.53 | 40.0 | 2.69e-01 | 82.8% | 44.4% |
| 5056319 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.52 | 43.0 | 3.05e-01 | 91.4% | 97.8% |
| 3744519 | 101.1.2.535 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25889 | 0.52 | 39.0 | 3.03e-01 | 87.9% | 55.6% |
| 3404903 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.52 | 44.0 | 3.17e-01 | 100.0% | 80.0% |
| 4003909 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.52 | 37.0 | 2.72e-01 | 79.3% | 82.9% |
| 3634542 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 43.0 | 3.11e-01 | 93.1% | 100.0% |
| 5074340 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.51 | 39.0 | 3.01e-01 | 100.0% | 35.0% |
| 3251044 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.51 | 32.0 | 2.37e-01 | 74.1% | 24.0% |
| 3645476 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.50 | 35.0 | 3.02e-01 | 75.9% | 78.0% |