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IMGVR_UViG_3300026186_000071-3300026186-Ga0208128_10022041

Arc-Vir

IMGVR_UViG_3300026186_000071-3300026186-Ga0208128_10022041

Identity

Kingdom:
archaea

Quality

93.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-29
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.81 62.0 4.86e-01 93.1% 39.1%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.68 48.0 3.41e-01 96.6% 45.2%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.68 50.0 3.56e-01 96.6% 26.6%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.65 46.0 3.76e-01 96.6% 46.1%
2x49A02 3.40.5.40 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › FHIPEP family, domain 2 0.64 44.0 4.13e-01 89.7% 64.6%
1x31A02 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.59 41.0 2.42e-01 100.0% 10.7%
1vloA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.58 39.0 2.80e-01 96.6% 23.6%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.57 40.0 2.69e-01 100.0% 16.4%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.57 38.0 3.05e-01 96.6% 38.5%
3upuA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 41.0 2.63e-01 86.2% 75.6%
2p90A01 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.54 44.0 2.71e-01 100.0% 99.6%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 43.0 2.41e-01 93.1% 22.6%
2jugA01 1.10.10.1830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain 0.53 38.0 3.16e-01 72.4% 81.8%
4a17H02 3.30.60.300 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 40.0 3.86e-01 100.0% 69.2%
2w82A03 1.10.10.1190 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Antirestriction protein ArdA, domain 3 0.52 38.0 3.29e-01 89.7% 83.9%
2iojA00 3.40.1390.20 Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › HprK N-terminal domain-like 0.52 43.0 2.97e-01 100.0% 65.8%
2f1rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 2.66e-01 96.6% 87.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4986463 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.78 60.0 3.49e-01 93.1% 9.8%
5080470 316.1.1.21 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.78 58.0 3.46e-01 89.7% 28.9%
4185373 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.76 60.0 4.43e-01 96.6% 42.4%
5011455 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.68 48.0 3.77e-01 89.7% 37.5%
3608676 4986.1.1.1 ↗ few secondary structure elements › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain › Trypan_glycop_C 0.62 44.0 4.34e-01 82.8% 68.6%
3178781 3310.1.1.1 ↗ a+b two layers › Insertion domain in 60S ribosomal protein rpP0 (L10P) › Insertion domain in 60S ribosomal protein rpP0 (L10P) › Insertion domain in 60S ribosomal protein rpP0 (L10P) › RL10P_insert 0.60 41.0 3.12e-01 89.7% 39.0%
4299003 2498.1.1.103 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SpoVR 0.58 40.0 2.53e-01 100.0% 80.0%
3164346 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.45e-01 86.2% 49.1%
5061645 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.55 40.0 3.39e-01 86.2% 60.3%
3462716 387.1.5.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.54 38.0 3.87e-01 89.7% 86.7%
4986386 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.51 41.0 2.76e-01 93.1% 31.7%
3942342 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.51 37.0 2.72e-01 100.0% 64.6%
5053794 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.51 38.0 2.55e-01 75.9% 71.5%
3380665 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.51 33.0 2.54e-01 86.2% 21.7%
3274554 304.103.1.3 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › MMADHC 0.50 33.0 2.37e-01 93.1% 17.7%