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IMGVR_UViG_3300026194_000194-3300026194-Ga0209509_100203228

Arc-Vir

IMGVR_UViG_3300026194_000194-3300026194-Ga0209509_100203228

Quality

70.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-57
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.85 56.0 5.05e-01 100.0% 51.5%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.83 56.0 4.19e-01 75.5% 30.6%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.83 65.0 5.22e-01 98.0% 45.6%
1jlcB03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.81 56.0 4.05e-01 73.5% 28.6%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.78 52.0 4.14e-01 75.5% 34.3%
1qhwA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.75 67.0 4.06e-01 100.0% 97.3%
2w1nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 52.0 4.41e-01 75.5% 70.7%
2essA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.72 64.0 5.09e-01 100.0% 88.9%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.72 64.0 4.42e-01 100.0% 34.6%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 58.0 4.53e-01 87.8% 75.3%
2iafA00 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.70 58.0 4.03e-01 87.8% 72.1%
3n4eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.70 49.0 3.87e-01 75.5% 35.6%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.69 56.0 4.50e-01 100.0% 45.1%
4nn5C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 56.0 4.59e-01 87.8% 71.4%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.68 56.0 4.85e-01 100.0% 58.2%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.68 46.0 4.18e-01 75.5% 50.7%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.67 55.0 5.55e-01 91.8% 100.0%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 57.0 4.18e-01 100.0% 38.7%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 58.0 4.90e-01 100.0% 59.5%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.67 59.0 5.00e-01 100.0% 66.7%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.67 58.0 4.46e-01 100.0% 69.6%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.66 53.0 3.71e-01 95.9% 79.7%
3vvvA00 2.60.40.2840 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 46.0 3.64e-01 75.5% 64.8%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 53.0 4.44e-01 89.8% 70.9%
4ztkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 55.0 3.48e-01 100.0% 64.6%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 3.31e-01 83.7% 33.0%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.63 49.0 3.51e-01 85.7% 44.8%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.62 55.0 3.81e-01 100.0% 54.7%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.61 48.0 3.87e-01 100.0% 41.1%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 51.0 3.79e-01 100.0% 39.4%
4az3A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 50.0 3.24e-01 100.0% 42.1%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.59 46.0 3.36e-01 100.0% 30.5%
8dhaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 3.47e-01 75.5% 77.0%
3brcA02 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.58 49.0 3.72e-01 98.0% 74.2%
2ya0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 50.0 3.94e-01 100.0% 90.4%
5fmgG00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 47.0 3.10e-01 100.0% 50.7%
1jzdC00 2.60.40.1250 Mainly Beta › Sandwich › Immunoglobulin-like › Thiol:disulfide interchange protein DsbD, N-terminal domain 0.54 46.0 3.48e-01 95.9% 61.9%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 2.76e-01 89.8% 23.9%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.30e-01 98.0% 31.6%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 34.0 3.30e-01 85.7% 55.7%
6vt2A03 2.60.40.4140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.13e-01 91.8% 75.0%
4e4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 42.0 3.19e-01 100.0% 66.7%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.51 40.0 2.69e-01 91.8% 23.9%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.88 62.0 3.63e-01 100.0% 10.9%
5053933 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.88 64.0 5.79e-01 100.0% 58.5%
3781776 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.87 66.0 3.91e-01 100.0% 12.6%
3481354 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.86 61.0 3.63e-01 100.0% 11.2%
5013467 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.83 65.0 3.85e-01 100.0% 13.2%
5018923 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.83 61.0 5.29e-01 100.0% 52.0%
3969722 6043.1.1.0 a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.83 63.0 5.56e-01 100.0% 57.1%
4957303 2484.1.1.330 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.82 53.0 3.11e-01 85.7% 8.8%
3827447 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.81 58.0 3.81e-01 83.7% 19.0%
3890539 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.81 64.0 5.98e-01 100.0% 70.0%
4959306 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.81 59.0 3.53e-01 100.0% 11.6%
4990440 2484.1.1.330 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.81 52.0 3.59e-01 87.8% 20.6%
4869677 4967.1.1.30 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RVT_connect 0.80 56.0 5.58e-01 73.5% 76.0%
5041549 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.80 61.0 3.73e-01 100.0% 14.5%
5003245 243.8.1.0 a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein 0.80 57.0 5.10e-01 98.0% 54.3%
5022840 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.79 52.0 4.32e-01 95.9% 40.0%
4031999 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.77 56.0 4.72e-01 100.0% 45.9%
4969673 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.76 54.0 3.23e-01 100.0% 12.0%
1877624 5.1.4.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.75 67.0 3.80e-01 100.0% 10.0%
5068496 5.1.4.471 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NHL 0.75 57.0 3.14e-01 100.0% 6.5%
3488451 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.74 64.0 3.77e-01 100.0% 12.3%
3416381 5.1.4.320 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.74 61.0 3.58e-01 100.0% 12.0%
4946923 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.74 66.0 4.14e-01 100.0% 97.6%
2104079 244.4.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.74 54.0 5.59e-01 87.8% 84.4%
3618440 222.1.1.15 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C 0.73 65.0 4.37e-01 100.0% 55.1%
3838341 5.1.3.26 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.73 56.0 3.38e-01 100.0% 12.4%
4944026 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 55.0 5.03e-01 98.0% 62.5%
3585414 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.72 52.0 4.08e-01 100.0% 35.5%
3940470 5.1.4.320 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.72 62.0 3.66e-01 100.0% 12.2%
4188237 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.72 47.0 4.53e-01 93.9% 60.0%
3271756 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 55.0 3.65e-01 93.9% 22.9%
5008587 2484.1.1.330 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.72 53.0 3.24e-01 79.6% 30.3%
3611339 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 59.0 4.90e-01 91.8% 52.9%
3701860 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 56.0 4.41e-01 85.7% 43.2%
3970982 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.71 57.0 5.05e-01 100.0% 61.4%
3474038 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.71 61.0 4.44e-01 100.0% 45.0%
4965832 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.71 62.0 4.24e-01 100.0% 98.8%
3933904 5.1.4.333 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF31099 0.71 58.0 3.37e-01 100.0% 10.1%
3601202 5.1.4.220 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.71 52.0 3.18e-01 100.0% 12.5%
3858824 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 55.0 4.83e-01 83.7% 84.3%
3882269 220.1.1.25 beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.70 63.0 4.86e-01 100.0% 55.2%
3940690 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 54.0 4.29e-01 87.8% 82.9%
3191498 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 61.0 3.51e-01 100.0% 16.2%
3957726 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.69 59.0 4.08e-01 100.0% 55.0%
3931011 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.69 55.0 4.02e-01 100.0% 33.1%
4970648 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.69 57.0 5.73e-01 93.9% 100.0%
5008209 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 55.0 4.71e-01 100.0% 55.0%
5079755 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.68 58.0 5.60e-01 98.0% 94.5%
3291499 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.68 53.0 3.87e-01 100.0% 30.0%
3508133 7528.1.1.1 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.68 57.0 4.32e-01 91.8% 86.4%
3337433 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.67 50.0 4.22e-01 85.7% 48.8%
3989853 77.1.1.13 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR 0.67 62.0 3.70e-01 100.0% 36.2%
3229434 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.67 57.0 3.50e-01 100.0% 15.5%
3269932 5.1.5.27 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N 0.67 56.0 3.23e-01 95.9% 13.2%
2717407 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 51.0 4.28e-01 83.7% 100.0%
4025256 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 53.0 4.54e-01 100.0% 55.0%
3742121 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 5.19e-01 100.0% 100.0%
5011152 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 54.0 5.26e-01 100.0% 98.2%
3851797 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.63 53.0 3.75e-01 100.0% 34.5%
3411195 11.1.1.538 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CHRD 0.59 49.0 3.75e-01 100.0% 62.3%
3960441 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.59 46.0 2.96e-01 100.0% 17.2%
3217504 9.1.1.49 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.58 50.0 3.95e-01 100.0% 64.8%
3627380 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 2.90e-01 100.0% 23.7%
4942979 11.1.1.284 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.57 47.0 4.02e-01 95.9% 69.4%
4327587 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.56 45.0 3.18e-01 100.0% 69.7%
1147343 243.1.1.38 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › BACOVA_00961-like 0.54 46.0 3.30e-01 98.0% 31.6%
3990949 2498.1.1.6 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.51 39.0 2.57e-01 93.9% 17.1%
185991 6023.1.1.0 beta barrels › Restriction endonuclease PabI › Restriction endonuclease PabI › Restriction endonuclease PabI 0.51 43.0 2.87e-01 98.0% 34.5%