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IMGVR_UViG_3300026194_000281-3300026194-Ga0209509_100069145

Arc-Vir

IMGVR_UViG_3300026194_000281-3300026194-Ga0209509_100069145

Quality

66.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-118
PDB
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.71 56.0 4.31e-01 85.7% 71.6%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.70 56.0 4.49e-01 85.7% 78.4%
2c61A00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 37.0 2.27e-01 82.9% 9.3%
5zliA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.63 47.0 4.20e-01 82.9% 81.1%
3lxfA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.63 46.0 4.05e-01 78.6% 98.1%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 43.0 3.81e-01 72.9% 86.7%
5e6pA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 46.0 4.07e-01 82.9% 91.4%
1v2yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 47.0 4.15e-01 85.7% 86.7%
1krhA01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.60 45.0 3.97e-01 81.4% 93.2%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 47.0 3.15e-01 88.6% 31.4%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.91e-01 85.7% 76.7%
1m94A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 44.0 4.39e-01 82.9% 100.0%
6jl3A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 44.0 4.37e-01 82.9% 100.0%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.52e-01 74.3% 87.2%
1ttnA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 43.0 4.26e-01 80.0% 97.3%
1gg3A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 43.0 4.19e-01 80.0% 100.0%
1wiaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 42.0 4.27e-01 80.0% 100.0%
4hppA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.57 43.0 3.96e-01 85.7% 91.1%
1z2mA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 43.0 4.21e-01 81.4% 94.8%
2mx2A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 44.0 4.23e-01 84.3% 98.8%
2dajA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 44.0 4.06e-01 84.3% 82.4%
3aiiA02 2.40.240.100 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.57 42.0 4.42e-01 94.3% 87.5%
2gbmA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 43.0 4.15e-01 82.9% 100.0%
1wj4A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 43.0 4.10e-01 82.9% 94.0%
3u7zA00 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.56 42.0 3.83e-01 81.4% 95.9%
1wx9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 44.0 4.20e-01 88.6% 88.4%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.56 41.0 3.00e-01 78.6% 74.8%
1hezE00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 42.0 4.41e-01 81.4% 100.0%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 42.0 3.87e-01 84.3% 99.0%
1b1zA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 40.0 3.35e-01 82.9% 78.7%
2bw2A01 3.10.20.420 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain 0.54 38.0 4.22e-01 78.6% 94.5%
3le2A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 37.0 3.09e-01 74.3% 80.9%
4m0wA01 3.10.20.540 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Papain-like viral protease, N-terminal domain 0.53 39.0 4.23e-01 80.0% 100.0%
4p16A01 3.10.20.540 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Papain-like viral protease, N-terminal domain 0.52 39.0 4.19e-01 80.0% 100.0%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 37.0 3.16e-01 74.3% 91.6%
4mtnA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.91e-01 77.1% 98.4%
3go5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.66e-01 74.3% 87.1%
1st8A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 2.87e-01 100.0% 47.4%
4kkiA02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.51 37.0 3.34e-01 78.6% 93.3%
1jq4A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.51 37.0 3.42e-01 81.4% 95.9%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.50 38.0 3.29e-01 82.9% 60.0%
1yelA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.50 37.0 3.34e-01 80.0% 59.8%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.50 37.0 3.36e-01 81.4% 82.2%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4089672 4987.1.1.1 few secondary structure elements › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal_L31 0.77 37.0 3.73e-01 81.4% 45.7%
3700173 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 49.0 4.97e-01 81.4% 97.1%
4650168 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.65 45.0 3.72e-01 84.3% 40.8%
3823151 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.62 45.0 3.71e-01 77.1% 48.8%
3340140 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 48.0 3.96e-01 84.3% 89.6%
3481704 221.1.1.59 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_4 0.61 50.0 4.35e-01 91.4% 97.3%
3803728 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.61 46.0 3.60e-01 81.4% 45.1%
3088278 221.1.1.1 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2 0.61 49.0 3.85e-01 87.1% 86.3%
4020877 239.4.1.0 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain 0.61 45.0 4.07e-01 82.9% 86.7%
3341364 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.61 45.0 3.74e-01 81.4% 51.9%
3458301 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.60 45.0 3.73e-01 81.4% 50.8%
3355348 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 45.0 4.20e-01 81.4% 94.4%
3622705 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 46.0 3.70e-01 84.3% 94.5%
3927045 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.60 46.0 3.92e-01 84.3% 66.7%
4121521 2498.1.1.12 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M4,Peptidase_M4_C 0.60 46.0 2.94e-01 82.9% 19.1%
3755617 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.60 45.0 3.90e-01 82.9% 64.9%
3372750 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.60 46.0 4.13e-01 84.3% 76.0%
3664345 221.1.1.59 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_4 0.60 46.0 4.28e-01 84.3% 98.9%
4932522 3174.1.1.2 beta barrels › Ribosomal protein L14-like › Ribosomal protein L14-related › Ribosomal protein L14-related › Ribosomal_S8e 0.60 46.0 3.83e-01 84.3% 69.6%
3309164 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.59 45.0 3.65e-01 81.4% 50.0%
3328146 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.59 45.0 3.59e-01 81.4% 49.6%
1759035 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.58 49.0 4.25e-01 94.3% 97.3%
3991694 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.58 51.0 4.44e-01 97.1% 87.6%
3497573 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.58 46.0 3.77e-01 87.1% 84.4%
3303997 221.1.1.59 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_4 0.58 50.0 4.05e-01 97.1% 82.2%
3827943 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.58 45.0 4.13e-01 82.9% 76.7%
3907144 221.1.1.59 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_4 0.58 49.0 4.05e-01 97.1% 81.5%
3599444 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 43.0 4.27e-01 81.4% 98.7%
3401193 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 46.0 4.01e-01 88.6% 61.8%
4285300 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.57 48.0 4.34e-01 92.9% 88.4%
4059008 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.57 44.0 4.54e-01 87.1% 90.8%
5028192 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.57 45.0 4.60e-01 87.1% 89.7%
3934695 220.4.1.0 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.57 44.0 4.05e-01 85.7% 74.7%
5040273 4.6.1.4 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.57 42.0 4.13e-01 87.1% 74.7%
5034646 4.6.1.4 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.56 43.0 4.15e-01 84.3% 76.2%
3261011 375.1.1.85 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 0.56 38.0 4.23e-01 98.6% 100.0%
3826758 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.56 43.0 3.82e-01 82.9% 67.0%
3806930 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.56 41.0 3.72e-01 80.0% 64.0%
2722539 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.56 46.0 4.08e-01 94.3% 65.1%
4968844 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.56 43.0 4.15e-01 85.7% 76.2%
5013928 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.56 43.0 4.06e-01 85.7% 89.4%
3172379 221.1.1.7 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX 0.55 44.0 3.91e-01 85.7% 81.0%
3574509 220.4.1.0 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.55 44.0 4.33e-01 87.1% 85.3%
3816395 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.55 42.0 3.31e-01 82.9% 49.7%
4646733 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.55 42.0 3.74e-01 82.9% 67.0%
4180206 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.55 41.0 3.64e-01 81.4% 64.8%
3221659 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 45.0 4.24e-01 95.7% 97.8%
3451500 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.54 42.0 3.29e-01 84.3% 57.5%
3428882 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.54 41.0 3.68e-01 82.9% 64.4%
3448534 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.54 41.0 3.49e-01 81.4% 55.8%
3812301 1.1.11.6 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.54 41.0 3.56e-01 82.9% 60.0%
3438369 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.53 42.0 3.58e-01 85.7% 67.0%
3266485 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.44e-01 90.0% 53.6%
3925067 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.53 43.0 3.58e-01 91.4% 70.0%
3827010 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.53 39.0 3.60e-01 80.0% 66.3%
3422823 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.53 40.0 3.20e-01 82.9% 54.5%
3813512 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.52 40.0 3.45e-01 81.4% 61.8%
3836258 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.52 39.0 3.44e-01 81.4% 59.0%
3321264 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.52 36.0 3.30e-01 97.1% 54.7%
3818376 1.1.11.6 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.52 39.0 3.33e-01 81.4% 54.8%
3435594 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.51 39.0 3.34e-01 81.4% 55.7%
3318678 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.51 39.0 3.33e-01 81.4% 55.7%
3416360 4.12.1.1 beta barrels › SH3 › Methuselah ectodomain › Methuselah ectodomain › Methuselah_N 0.51 40.0 3.48e-01 85.7% 72.7%
3811597 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.51 38.0 3.43e-01 81.4% 68.0%
3748079 376.1.6.10 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR, PF26200 0.51 35.0 2.82e-01 94.3% 33.5%
4987860 268.1.1.0 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.51 40.0 3.27e-01 85.7% 63.8%
3344608 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.51 38.0 3.38e-01 80.0% 60.0%
3586829 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.51 38.0 2.84e-01 85.7% 42.9%
3991137 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.50 42.0 2.76e-01 95.7% 35.0%
D2 high residues 121-176
PDB
D3 medium residues 177-233
PDB