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IMGVR_UViG_3300026204_000079-3300026204-Ga0208521_10073952
Arc-VirIMGVR_UViG_3300026204_000079-3300026204-Ga0208521_10073952
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 13-88
Domain cluster:
rep: MZ870514.1__UAW00963.1__X__00014__D40-110
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16510.13 best | P22_portal | 35.3 | 7.20e-09 | 100.0% | 12.4% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mycA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.52 | 45.0 | 3.04e-01 | 100.0% | 59.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2794172 | 4038.1.1.6 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › P22_portal | 0.92 | 87.0 | 7.26e-01 | 100.0% | 62.8% |
| 3097398 | 4038.1.1.6 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › P22_portal | 0.91 | 85.0 | 7.09e-01 | 100.0% | 61.3% |
| 3275269 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.58 | 46.0 | 2.94e-01 | 88.2% | 48.6% |
| 3986740 | 101.1.2.380 ↗ | alpha arrays › HTH › HTH › winged helix domain › TraI_hel_assoc_N | 0.52 | 36.0 | 2.34e-01 | 71.1% | 24.3% |
D2
medium
residues 89-176_214-226_315-343_439-514
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16510.13 best | P22_portal | 28.0 | 1.20e-06 | 57.8% | 14.8% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdrA02 | 3.40.140.120 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › | 0.60 | 35.0 | 4.38e-01 | 90.8% | 92.1% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.60 | 27.0 | 3.44e-01 | 95.1% | 69.1% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.59 | 21.0 | 3.57e-01 | 88.3% | 95.5% |
| 1kbaA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.57 | 20.0 | 3.33e-01 | 71.4% | 92.4% |
| 1hbxA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.54 | 18.0 | 2.81e-01 | 76.7% | 74.6% |
| 2qa4I01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.52 | 10.0 | 2.12e-01 | 83.5% | 58.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3390499 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.57 | 30.0 | 3.61e-01 | 87.9% | 73.6% |
| 3661638 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.56 | 19.0 | 2.69e-01 | 80.6% | 60.0% |
| 3525531 | 382.1.1.2 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP | 0.56 | 23.0 | 3.38e-01 | 75.7% | 85.9% |
| 3593924 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.56 | 27.0 | 3.33e-01 | 87.4% | 71.7% |
| 3496515 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.56 | 28.0 | 3.31e-01 | 88.8% | 68.3% |
| 3804378 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.54 | 16.0 | 2.82e-01 | 85.4% | 76.0% |
| 3650990 | 274.1.1.44 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 | 0.52 | 28.0 | 3.39e-01 | 82.0% | 79.2% |
D3
medium
residues 243-314_515-534
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f6fB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 33.0 | 3.33e-01 | 87.0% | 54.6% |
| 2byeA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 34.0 | 3.37e-01 | 87.0% | 58.4% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.54 | 34.0 | 3.96e-01 | 87.0% | 92.1% |
| 1sq2N00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.43e-01 | 88.0% | 59.8% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 34.0 | 3.38e-01 | 85.9% | 62.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4024040 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.67 | 39.0 | 4.45e-01 | 87.0% | 80.0% |
| 3675745 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.66 | 33.0 | 3.69e-01 | 73.9% | 58.9% |
| 5019455 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.60 | 38.0 | 2.96e-01 | 78.3% | 29.7% |
| 3563069 | 1086.1.1.5 ↗ | beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › EMI | 0.58 | 28.0 | 3.80e-01 | 71.7% | 93.3% |
| 5078458 | 2004.1.1.94 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 | 0.54 | 46.0 | 3.41e-01 | 91.3% | 76.4% |
| 5031010 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 39.0 | 4.35e-01 | 90.2% | 98.6% |
| 4226244 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.54 | 38.0 | 3.56e-01 | 73.9% | 79.1% |
| 4151900 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.53 | 38.0 | 3.37e-01 | 76.1% | 88.2% |
| 5018298 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.53 | 37.0 | 3.51e-01 | 73.9% | 97.4% |
| 3985028 | 213.1.1.103 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Mom | 0.52 | 36.0 | 2.83e-01 | 72.8% | 40.9% |
| 5046778 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.51 | 36.0 | 3.52e-01 | 72.8% | 92.0% |
D4
medium
residues 344-432
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l44A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.76 | 31.0 | 2.38e-01 | 92.1% | 18.6% |
| 3e22A03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 39.0 | 4.81e-01 | 100.0% | 92.6% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 54.0 | 5.14e-01 | 100.0% | 74.5% |
| 1kt1A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 34.0 | 2.80e-01 | 83.1% | 28.5% |
| 3caiA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.66 | 32.0 | 2.78e-01 | 84.3% | 28.8% |
| 3kdqA00 | 6.10.320.10 | Special › Helix non-globular › Ferritin › | 0.62 | 51.0 | 4.23e-01 | 100.0% | 51.3% |
| 2eboA00 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 47.0 | 5.07e-01 | 94.4% | 98.6% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 29.0 | 2.99e-01 | 94.4% | 48.2% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.59 | 48.0 | 4.40e-01 | 96.6% | 67.2% |
| 4fxxB01 | 6.10.140.1790 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 42.0 | 4.63e-01 | 92.1% | 91.7% |
| 1m4rB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 36.0 | 3.08e-01 | 95.5% | 38.3% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 44.0 | 4.74e-01 | 100.0% | 98.7% |
| 3s6pG00 | 6.10.140.1660 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 30.0 | 3.31e-01 | 95.5% | 69.4% |
| 3spcA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 44.0 | 3.99e-01 | 97.8% | 88.2% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4131078 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.77 | 42.0 | 4.47e-01 | 100.0% | 60.0% |
| 3965414 | 4038.1.1.6 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › P22_portal | 0.75 | 66.0 | 4.22e-01 | 100.0% | 27.8% |
| 5083493 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.75 | 69.0 | 4.57e-01 | 100.0% | 26.9% |
| 3980782 | 4038.1.1.7 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 | 0.72 | 66.0 | 4.40e-01 | 100.0% | 27.8% |
| 3367387 | 604.5.1.7 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT | 0.68 | 44.0 | 4.25e-01 | 100.0% | 58.0% |
| 4031453 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.68 | 60.0 | 4.38e-01 | 100.0% | 36.1% |
| 3710532 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.64 | 59.0 | 5.56e-01 | 100.0% | 99.0% |
| 3394822 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.64 | 56.0 | 4.41e-01 | 100.0% | 51.8% |
| 4891117 | 4038.1.1.11 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal | 0.63 | 51.0 | 3.17e-01 | 100.0% | 14.1% |
| 3550392 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 54.0 | 4.32e-01 | 100.0% | 54.1% |
| 3615558 | 4001.1.1.4 ↗ | a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB | 0.61 | 28.0 | 2.67e-01 | 87.6% | 37.1% |
| 4004118 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.61 | 54.0 | 4.27e-01 | 100.0% | 54.1% |
| 3658572 | 6006.1.1.1 ↗ | extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › IQ | 0.61 | 44.0 | 3.89e-01 | 88.8% | 52.3% |
| 4029392 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.60 | 52.0 | 4.11e-01 | 94.4% | 50.8% |
| 4026657 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 52.0 | 4.29e-01 | 93.3% | 67.1% |
| 3223233 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.59 | 52.0 | 3.94e-01 | 100.0% | 41.7% |
| 3937537 | 3755.3.1.462 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Pinin_SDK_memA | 0.59 | 54.0 | 3.98e-01 | 100.0% | 59.6% |
| 3938245 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.58 | 51.0 | 3.93e-01 | 100.0% | 45.8% |
| 3473147 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.56 | 50.0 | 4.12e-01 | 100.0% | 75.8% |
| 3639877 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 43.0 | 4.05e-01 | 100.0% | 68.2% |
| 3612305 | 3573.1.1.1 ↗ | alpha arrays › Histone RNA hairpin-binding protein RNA-binding domain › Histone RNA hairpin-binding protein RNA-binding domain › Histone RNA hairpin-binding protein RNA-binding domain › SLBP_RNA_bind | 0.55 | 25.0 | 2.63e-01 | 100.0% | 39.5% |
| 3699462 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 43.0 | 3.33e-01 | 86.5% | 64.2% |
| 4230910 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.55 | 29.0 | 3.45e-01 | 100.0% | 76.3% |
| 5039148 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 29.0 | 3.31e-01 | 97.8% | 70.8% |
| 4942757 | 606.1.1.1 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop | 0.53 | 45.0 | 4.36e-01 | 97.8% | 100.0% |
| 3603323 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.53 | 28.0 | 3.50e-01 | 98.9% | 83.6% |
| 3665446 | 3860.1.1.1 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › IQ | 0.53 | 37.0 | 3.58e-01 | 71.9% | 96.0% |
| 4932532 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.52 | 48.0 | 4.55e-01 | 100.0% | 100.0% |
| 4292211 | 3016.1.1.19 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C | 0.52 | 29.0 | 2.85e-01 | 100.0% | 49.0% |
| 4031944 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 29.0 | 3.06e-01 | 100.0% | 61.3% |
| 3406678 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.50 | 30.0 | 3.21e-01 | 100.0% | 69.3% |
D5
medium
residues 578-635
Domain cluster:
representative