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IMGVR_UViG_3300026210_000034-3300026210-Ga0208642_100111021
Arc-VirIMGVR_UViG_3300026210_000034-3300026210-Ga0208642_100111021
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-160
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ev7A01 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.70 | 61.0 | 6.02e-01 | 96.8% | 87.4% |
| 2w8mA00 | 3.40.1350.50 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › D212 PD-(D/E)XK nuclease, catalytic motif | 0.67 | 50.0 | 4.92e-01 | 77.1% | 90.3% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.64 | 45.0 | 5.01e-01 | 74.5% | 91.1% |
| 4ic1D00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.63 | 44.0 | 3.97e-01 | 70.1% | 64.6% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.63 | 44.0 | 4.97e-01 | 75.8% | 95.0% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 36.0 | 4.57e-01 | 77.7% | 98.9% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.62 | 43.0 | 3.93e-01 | 70.1% | 66.2% |
| 4esjA01 | 3.40.210.30 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › Dam replacing family, catalytic PD-(D/E)XK domain | 0.59 | 50.0 | 5.07e-01 | 94.3% | 92.9% |
| 1eyuA00 | 3.40.210.10 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › PVUII Endonuclease, subunit A | 0.57 | 45.0 | 4.60e-01 | 85.4% | 91.0% |
| 4oa3A00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.57 | 33.0 | 3.51e-01 | 86.6% | 63.1% |
| 2dirA01 | 3.30.2300.10 | Alpha Beta › 2-Layer Sandwich › THUMP fold › THUMP superfamily | 0.56 | 27.0 | 3.53e-01 | 75.8% | 82.8% |
| 3r3pB00 | 3.40.960.10 | Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease | 0.54 | 33.0 | 4.04e-01 | 84.7% | 96.9% |
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.53 | 43.0 | 4.13e-01 | 86.6% | 80.4% |
| 2znrA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 46.0 | 4.47e-01 | 98.1% | 87.1% |
| 3swoA02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.50 | 30.0 | 3.50e-01 | 79.0% | 86.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5035680 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.77 | 70.0 | 6.69e-01 | 96.2% | 98.9% |
| 3604185 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.75 | 71.0 | 6.43e-01 | 100.0% | 91.2% |
| 4967616 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 68.0 | 6.48e-01 | 96.8% | 96.7% |
| 4284098 | 2008.1.1.198 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF6998 | 0.72 | 57.0 | 6.17e-01 | 88.5% | 100.0% |
| 5035744 | 2008.1.1.77 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C | 0.71 | 52.0 | 5.77e-01 | 75.2% | 97.6% |
| 4627429 | 2008.1.1.180 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27366, PF30697 | 0.71 | 65.0 | 5.44e-01 | 100.0% | 86.4% |
| 4936054 | 2008.1.1.77 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C | 0.70 | 51.0 | 5.76e-01 | 75.2% | 98.3% |
| 4260673 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.69 | 50.0 | 5.29e-01 | 74.5% | 90.6% |
| 3721927 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 49.0 | 4.75e-01 | 77.1% | 100.0% |
| 5013988 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 46.0 | 4.98e-01 | 71.3% | 95.4% |
| 4331456 | 2008.1.1.187 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_AccI | 0.65 | 51.0 | 4.60e-01 | 81.5% | 99.5% |
| 4489860 | 2008.1.1.13 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecU | 0.64 | 53.0 | 5.22e-01 | 86.6% | 100.0% |
| 5026622 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.64 | 39.0 | 4.86e-01 | 70.7% | 100.0% |
| 222168 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.63 | 44.0 | 3.97e-01 | 70.1% | 64.6% |
| 5026220 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 45.0 | 4.38e-01 | 73.2% | 97.7% |
| 4028316 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.62 | 36.0 | 4.61e-01 | 75.8% | 100.0% |
| 4942551 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.62 | 45.0 | 4.02e-01 | 74.5% | 71.8% |
| 1503110 | 2008.1.1.21 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnI | 0.60 | 52.0 | 5.04e-01 | 92.4% | 97.7% |
| 5000157 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.60 | 44.0 | 4.04e-01 | 75.2% | 88.5% |
| 4014350 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 47.0 | 3.64e-01 | 82.8% | 72.8% |
| 4991290 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 42.0 | 3.52e-01 | 76.4% | 43.8% |
| 3620960 | 2008.1.1.147 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 | 0.58 | 46.0 | 3.49e-01 | 83.4% | 71.0% |
| 4940595 | 2008.1.1.14 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr | 0.58 | 34.0 | 4.11e-01 | 73.9% | 90.0% |
| 4307642 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.57 | 38.0 | 4.46e-01 | 86.6% | 99.0% |
| 3274159 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 39.0 | 4.49e-01 | 84.7% | 100.0% |
| 1282261 | 2008.1.1.17 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 | 0.54 | 32.0 | 3.99e-01 | 84.7% | 96.9% |
| 5019719 | 7518.1.1.6 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › DacZ_A | 0.53 | 29.0 | 3.16e-01 | 76.4% | 63.2% |
| 3033361 | 4052.1.1.0 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like | 0.52 | 32.0 | 3.81e-01 | 70.1% | 94.0% |
| 4352045 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.52 | 25.0 | 3.03e-01 | 92.4% | 71.1% |
| 4628389 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.51 | 34.0 | 3.75e-01 | 100.0% | 85.0% |