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IMGVR_UViG_3300026210_000034-3300026210-Ga0208642_100111028

Arc-Vir

IMGVR_UViG_3300026210_000034-3300026210-Ga0208642_100111028

Identity

Kingdom:
archaea

Quality

70.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-62
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n98A01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.72 51.0 3.01e-01 72.6% 61.1%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.72 54.0 5.39e-01 87.1% 78.1%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.68 55.0 4.57e-01 91.9% 50.0%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 50.0 5.13e-01 82.3% 83.1%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.65 50.0 4.98e-01 82.3% 80.0%
1a22A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.65 55.0 3.88e-01 91.9% 59.4%
2ahoB02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.65 53.0 4.67e-01 90.3% 65.9%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.64 43.0 4.55e-01 74.2% 77.2%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.63 46.0 4.05e-01 80.6% 76.3%
2bg1A01 3.90.1310.40 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › 0.62 49.0 4.65e-01 88.7% 71.4%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 47.0 4.42e-01 96.8% 69.6%
2ctoA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.59 41.0 4.19e-01 87.1% 77.0%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 49.0 3.18e-01 95.2% 38.2%
2ch0A01 1.10.10.1180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAN1, winged-helix domain 0.57 39.0 3.40e-01 75.8% 44.9%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 45.0 3.47e-01 96.8% 38.8%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.54 48.0 4.52e-01 95.2% 84.9%
3b5iA02 1.10.1200.220 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.53 39.0 3.59e-01 87.1% 58.9%
1c20A00 1.10.150.60 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain 0.51 36.0 3.01e-01 77.4% 38.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050325 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.78 57.0 3.64e-01 88.7% 16.8%
3690556 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.77 57.0 5.82e-01 93.5% 81.7%
4157142 150.5.1.7 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Mis12 0.72 60.0 4.82e-01 88.7% 49.6%
3554386 3755.3.1.309 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Mis12 0.72 59.0 4.99e-01 88.7% 57.0%
4934657 4323.1.1.0 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.70 51.0 3.64e-01 75.8% 29.7%
3802520 101.1.1.476 ↗ alpha arrays › HTH › HTH › Three-helical HTH › POX 0.69 54.0 4.53e-01 82.3% 58.0%
4531707 109.3.1.33 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_3 0.69 44.0 3.17e-01 72.6% 23.4%
185221 3502.1.1.1 ↗ alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.69 55.0 5.42e-01 93.5% 80.6%
3940362 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 60.0 4.07e-01 100.0% 48.9%
4276746 192.1.1.40 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › VMA21 0.67 47.0 4.59e-01 75.8% 67.6%
3507860 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 4.48e-01 87.1% 59.0%
4412641 148.1.3.203 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.67 60.0 4.47e-01 100.0% 84.5%
3702347 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.66 52.0 3.60e-01 82.3% 33.7%
5024245 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.63 53.0 4.24e-01 88.7% 91.8%
3495550 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.59 49.0 4.09e-01 95.2% 52.4%
3260418 5043.1.1.0 ↗ extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.57 41.0 4.04e-01 75.8% 76.9%
3198528 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.53 40.0 4.27e-01 83.9% 100.0%