←Back to structures
IMGVR_UViG_3300026210_000042-3300026210-Ga0208642_10012784
Arc-VirIMGVR_UViG_3300026210_000042-3300026210-Ga0208642_10012784
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-168
Domain cluster:
rep: IMGVR_UViG_3300001346_000109-3300001346-JGI20151J14362_100012206__D11-176
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11649.13 best | T4_neck-protein | 107.2 | 1.40e-30 | 98.7% | 50.7% |
D2
high
residues 177-264_273-278
Domain cluster:
rep: rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00171__D444-515
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2derA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.69 | 54.0 | 5.61e-01 | 84.0% | 95.4% |
| 3t05A02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.68 | 48.0 | 4.77e-01 | 73.4% | 82.5% |
| 1nrkA03 | 2.40.30.160 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.68 | 51.0 | 4.68e-01 | 79.8% | 96.7% |
| 1v5vA03 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.67 | 50.0 | 5.44e-01 | 78.7% | 97.3% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.67 | 50.0 | 5.06e-01 | 78.7% | 97.9% |
| 2npiA03 | 2.40.30.330 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Pre-mRNA cleavage complex subunit Clp1, C-terminal domain | 0.67 | 45.0 | 4.45e-01 | 70.2% | 96.1% |
| 1pj5A05 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.66 | 49.0 | 5.28e-01 | 77.7% | 94.9% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.66 | 50.0 | 5.25e-01 | 83.0% | 88.4% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 49.0 | 4.95e-01 | 79.8% | 95.7% |
| 3ttgA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.64 | 49.0 | 3.36e-01 | 81.9% | 33.8% |
| 1vw3C01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 44.0 | 3.94e-01 | 70.2% | 54.2% |
| 3girA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.64 | 47.0 | 5.04e-01 | 77.7% | 96.2% |
| 1ep3B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 44.0 | 4.34e-01 | 71.3% | 85.9% |
| 2bhgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 45.0 | 4.44e-01 | 74.5% | 79.4% |
| 4paaA05 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.63 | 47.0 | 5.03e-01 | 79.8% | 93.7% |
| 1yy3A02 | 2.40.10.240 | Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like | 0.63 | 41.0 | 4.09e-01 | 86.2% | 63.6% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.62 | 47.0 | 4.85e-01 | 83.0% | 84.6% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.62 | 43.0 | 3.99e-01 | 71.3% | 64.1% |
| 2lp6A00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.61 | 42.0 | 4.26e-01 | 70.2% | 81.3% |
| 3tfiA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.60 | 50.0 | 3.40e-01 | 93.6% | 42.5% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.60 | 42.0 | 4.01e-01 | 72.3% | 67.0% |
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.60 | 41.0 | 4.19e-01 | 71.3% | 81.5% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.58 | 39.0 | 4.21e-01 | 70.2% | 86.1% |
| 3zn6A02 | 2.60.40.3410 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 42.0 | 4.35e-01 | 75.5% | 85.1% |
| 3nziA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 39.0 | 3.83e-01 | 72.3% | 67.0% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.56 | 38.0 | 3.54e-01 | 71.3% | 63.1% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 39.0 | 4.32e-01 | 83.0% | 98.7% |
| 7zxkB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.91e-01 | 75.5% | 86.1% |
| 1od3A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 37.0 | 3.43e-01 | 77.7% | 93.9% |
| 3oz2A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.50 | 40.0 | 3.45e-01 | 89.4% | 52.5% |
| 2awnC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 24.0 | 2.82e-01 | 70.2% | 62.1% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4556837 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.79 | 57.0 | 6.47e-01 | 80.9% | 100.0% |
| 4990333 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.72 | 49.0 | 4.29e-01 | 70.2% | 91.4% |
| 4097656 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.72 | 56.0 | 5.66e-01 | 83.0% | 91.6% |
| 4130681 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.72 | 52.0 | 5.74e-01 | 76.6% | 100.0% |
| 4593264 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.72 | 56.0 | 5.84e-01 | 83.0% | 97.6% |
| 4287778 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.71 | 54.0 | 5.51e-01 | 79.8% | 90.0% |
| 4296283 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.71 | 54.0 | 5.60e-01 | 79.8% | 96.5% |
| 4956344 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.71 | 48.0 | 5.36e-01 | 70.2% | 97.3% |
| 4254437 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.70 | 54.0 | 5.65e-01 | 80.9% | 97.6% |
| 4108039 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.70 | 50.0 | 5.25e-01 | 74.5% | 88.2% |
| 3604617 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.70 | 48.0 | 4.24e-01 | 70.2% | 95.6% |
| 3437164 | 3613.1.1.1 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Clp1 | 0.70 | 48.0 | 4.47e-01 | 70.2% | 91.3% |
| 4270212 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.70 | 53.0 | 5.45e-01 | 80.9% | 89.9% |
| 4200507 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.69 | 51.0 | 5.44e-01 | 76.6% | 97.5% |
| 3265100 | 1.1.7.90 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 | 0.69 | 48.0 | 4.47e-01 | 71.3% | 85.2% |
| 3282462 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.69 | 51.0 | 5.62e-01 | 85.1% | 97.3% |
| 5050226 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.69 | 47.0 | 4.63e-01 | 70.2% | 91.0% |
| 4215822 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.69 | 48.0 | 5.48e-01 | 74.5% | 98.6% |
| 4950699 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.69 | 47.0 | 4.91e-01 | 70.2% | 89.4% |
| 3590326 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.68 | 48.0 | 4.64e-01 | 72.3% | 77.1% |
| 3793066 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.67 | 53.0 | 5.36e-01 | 84.0% | 93.5% |
| 3939997 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.67 | 57.0 | 5.83e-01 | 92.6% | 97.8% |
| 4959198 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.67 | 46.0 | 4.04e-01 | 71.3% | 95.7% |
| 3950185 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.67 | 52.0 | 5.35e-01 | 84.0% | 90.0% |
| 4933171 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.66 | 45.0 | 4.26e-01 | 70.2% | 95.5% |
| 4025330 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.66 | 51.0 | 5.30e-01 | 83.0% | 91.8% |
| 4301091 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.65 | 55.0 | 5.61e-01 | 94.7% | 95.6% |
| 3522226 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.65 | 55.0 | 5.41e-01 | 92.6% | 98.0% |
| 4072484 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.65 | 53.0 | 5.44e-01 | 95.7% | 92.2% |
| 3504760 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.64 | 54.0 | 5.54e-01 | 91.5% | 96.7% |
| 1567470 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.64 | 44.0 | 4.40e-01 | 71.3% | 84.5% |
| 4946268 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 44.0 | 4.43e-01 | 72.3% | 87.4% |
| 3574784 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 43.0 | 4.13e-01 | 71.3% | 67.3% |
| 4976915 | 1.1.7.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae | 0.62 | 42.0 | 4.22e-01 | 70.2% | 77.6% |
| 4075660 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.62 | 48.0 | 5.07e-01 | 85.1% | 94.0% |
| 4966046 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.61 | 50.0 | 5.21e-01 | 92.6% | 97.6% |
| 4980898 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 42.0 | 4.17e-01 | 71.3% | 87.0% |
| 4069807 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.61 | 42.0 | 4.17e-01 | 71.3% | 83.0% |
| 3969656 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.60 | 41.0 | 4.25e-01 | 70.2% | 88.9% |
| 3977079 | 1.1.12.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins | 0.60 | 40.0 | 3.81e-01 | 70.2% | 55.7% |
| 3945286 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 41.0 | 3.96e-01 | 71.3% | 81.0% |
| 4042035 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.54 | 43.0 | 4.41e-01 | 94.7% | 93.3% |
| 3249113 | 11.1.1.698 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 | 0.50 | 38.0 | 3.80e-01 | 83.0% | 80.0% |